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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
853
total RNA-seq
750
ChIP-seq
237
ATAC-seq
179
single cell RNA-seq
174
DNase-seq
87
RNA microarray
27
snATAC-seq
23
WGBS
13
small RNA-seq
10
RRBS
9
Hi-C
5
pCHi-C
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1045
Transcription
750
DNA binding
442
DNA accessibility
33
DNA methylation
9
3D chromatin structure
Target of assay
556
histone
556
histone modification
278
broad histone mark
278
narrow histone mark
141
control
55
transcription factor
26
RNA binding protein
3
other context
3
other post-translational modification
2
nucleotide modification
Date released
544
February, 2021
236
October, 2019
230
August, 2017
229
August, 2021
163
June, 2019
120
July, 2018
115
May, 2019
95
February, 2023
82
November, 2017
80
April, 2019
74
October, 2018
69
July, 2019
47
September, 2023
40
May, 2021
40
May, 2024
40
November, 2019
March, 2020
26
May, 2022
24
February, 2020
23
October, 2017
19
April, 2020
19
November, 2018
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
August, 2022
Available data
1611
bam
1497
bigWig
896
tsv
869
bed narrowPeak
512
bigBed narrowPeak
294
fastq
210
bed broadPeak
199
bed bed3+
173
bigBed broadPeak
168
tagAlign
157
txt
64
xls
24
bed bedMethyl
24
bigBed bedMethyl
5
bed bed3
5
csv
4
hic
3
bedpe bed3+
1
bedpe
1
tagAlign bed3+
Organism
2369
Homo sapiens
Biosample type
2378
tissue
1073
primary cell
371
in vitro differentiated cells
250
cell line
6
stem cell
Organ
546
connective tissue
495
pancreas
487
adipose tissue
liver
306
heart
299
kidney
263
brain
158
bone element
130
blood vessel
130
vasculature
122
limb
77
musculature of body
73
artery
56
eye
43
nerve
24
spleen
19
lung
18
ureter
16
skeleton
15
epithelium
4
gonad
4
ovary
2
pituitary gland
1
lymph node
1
pericardium
1
skin of body
1
spinal cord
1
thymus
Project
2285
AMP
47
KPMP
27
T1D
19
LungMap
Genome assembly (visualization)
1613
GRCh38
1471
hg19
Lab
2066
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
89
inconsistent ontology term
8
audit script error
Audit category:
26
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
month_released!
August, 2022
March, 2020
organ_slims!
liver
BIOSAMPLE
ASSAY
2378 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
WGBS
small RNA-seq
RRBS
Hi-C
pCHi-C
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
290
69
66
6
1
6
1
3
4
1
4
adipose tissue
382
2
3
3
kidney
49
27
75
64
13
6
1
1
1
bone element
84
heart left ventricle
2
35
2
18
3
4
1
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