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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1026
total RNA-seq
820
ChIP-seq
259
ATAC-seq
179
single cell RNA-seq
176
DNase-seq
85
RNA microarray
28
snATAC-seq
27
WGBS
24
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1221
Transcription
820
DNA binding
467
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Target of assay
595
histone modification
594
histone
310
narrow histone mark
284
broad histone mark
164
control
63
transcription factor
26
RNA binding protein
3
other context
3
other post-translational modification
2
nucleotide modification
Date released
545
February, 2021
284
August, 2017
229
August, 2021
196
October, 2019
193
May, 2020
163
June, 2019
120
July, 2018
115
May, 2019
95
February, 2023
82
November, 2017
80
April, 2019
77
July, 2019
74
October, 2018
66
May, 2022
December, 2017
47
September, 2023
40
May, 2021
40
May, 2024
40
November, 2019
39
March, 2020
26
November, 2018
24
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
December, 2019
2
January, 2018
1
August, 2022
Available data
1817
bam
1705
bigWig
1068
tsv
921
bed narrowPeak
499
bigBed narrowPeak
329
fastq
238
tagAlign
211
bed broadPeak
203
bed bed3+
174
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2669
Homo sapiens
Biosample type
2678
tissue
1083
primary cell
662
cell line
349
in vitro differentiated cells
7
stem cell
Organ
547
connective tissue
505
pancreas
488
adipose tissue
313
heart
313
liver
296
kidney
265
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
82
musculature of body
73
artery
56
eye
nerve
25
spleen
20
lung
18
ureter
16
skeleton
14
epithelium
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2581
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1792
GRCh38
1688
hg19
Lab
2326
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
91
inconsistent ontology term
7
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
month_released!
December, 2017
December, 2019
organ_slims!
gonad
nerve
BIOSAMPLE
ASSAY
2678 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
292
67
68
6
1
7
4
3
1
1
4
adipose tissue
382
2
3
3
1
liver
167
107
20
1
2
3
1
1
1
1
kidney
49
27
75
63
13
6
1
1
1
bone element
84
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