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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
721
ChIP-seq
Assay category
721
DNA binding
Target of assay
628
histone modification
627
histone
324
narrow histone mark
303
broad histone mark
187
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
168
October, 2019
146
August, 2017
93
May, 2019
70
November, 2017
66
April, 2019
45
October, 2018
40
May, 2024
36
December, 2017
27
May, 2020
12
October, 2017
7
November, 2018
6
January, 2019
3
December, 2018
2
March, 2020
Available data
614
bigWig
594
bed narrowPeak
554
bam
377
bigBed narrowPeak
186
tagAlign
152
fastq
35
bed broadPeak
25
bed bed3+
1
tagAlign bed3+
Organism
715
Homo sapiens
Biosample type
721
tissue
399
cell line
247
primary cell
145
in vitro differentiated cells
2
stem cell
Organ
184
brain
108
liver
107
heart
90
pancreas
57
blood vessel
57
vasculature
50
connective tissue
49
adipose tissue
49
limb
25
musculature of body
24
nerve
21
artery
21
kidney
12
spleen
4
gonad
4
ovary
2
eye
1
lymph node
1
pituitary gland
Project
719
AMP
2
T1D
Genome assembly (visualization)
586
GRCh38
525
hg19
Lab
681
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
27
inconsistent control
2
inconsistent ontology term
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
month_released!
February, 2018
BIOSAMPLE
ASSAY
721 results
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Clear Filters
ChIP-seq
tissue
liver
101
islet of Langerhans
58
left cardiac atrium
40
subcutaneous abdominal adipose tissue
31
heart left ventricle
29
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