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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
832
total RNA-seq
540
ChIP-seq
235
ATAC-seq
179
single cell RNA-seq
147
DNase-seq
87
RNA microarray
28
snATAC-seq
23
WGBS
22
pCHi-C
15
Hi-C
9
RRBS
9
small RNA-seq
4
MeRIP-seq
3
FAIRE-seq
3
snDrop-seq
Assay category
1020
Transcription
540
DNA binding
413
DNA accessibility
32
DNA methylation
15
3D chromatin structure
Target of assay
374
histone
374
histone modification
208
broad histone mark
166
narrow histone mark
116
control
55
transcription factor
26
RNA binding protein
other context
3
other post-translational modification
2
nucleotide modification
Date released
544
February, 2021
230
August, 2017
229
August, 2021
150
October, 2019
138
June, 2019
120
July, 2018
94
February, 2023
87
May, 2019
80
April, 2019
74
October, 2018
58
July, 2019
47
September, 2023
40
May, 2021
40
May, 2024
40
November, 2019
35
March, 2020
26
May, 2022
19
April, 2020
15
May, 2023
14
November, 2018
February, 2020
8
January, 2021
7
December, 2018
7
January, 2019
7
October, 2017
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1390
bam
1302
bigWig
887
tsv
676
bed narrowPeak
393
bigBed narrowPeak
279
fastq
174
bed broadPeak
172
bed bed3+
157
txt
146
bigBed broadPeak
64
xls
50
tagAlign
23
bed bedMethyl
23
bigBed bedMethyl
10
hic
9
bedpe bed3+
5
csv
4
bed bed3
1
bedpe
Organism
2127
Homo sapiens
Biosample type
2136
tissue
1053
primary cell
379
in vitro differentiated cells
261
cell line
10
stem cell
Organ
545
connective tissue
504
pancreas
486
adipose tissue
liver
310
heart
299
kidney
brain
158
bone element
130
blood vessel
130
vasculature
119
limb
80
musculature of body
71
artery
55
eye
42
nerve
22
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
2039
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1415
GRCh38
1341
hg19
Lab
1824
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
88
inconsistent ontology term
9
audit script error
Audit category:
22
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
month_released!
February, 2020
organ_slims!
brain
liver
target.investigated_as!
other context
BIOSAMPLE
ASSAY
2136 results
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total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
Hi-C
RRBS
small RNA-seq
MeRIP-seq
FAIRE-seq
snDrop-seq
tissue
islet of Langerhans
292
71
67
6
1
7
4
3
1
4
1
adipose tissue
382
2
3
3
1
kidney
49
27
75
64
13
6
1
1
1
bone element
84
heart left ventricle
3
35
2
18
3
4
1
1
1
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