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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
880
ChIP-seq
507
total RNA-seq
171
ATAC-seq
115
single cell RNA-seq
110
DNase-seq
25
pCHi-C
22
snATAC-seq
15
WGBS
11
Hi-C
5
RRBS
4
MeRIP-seq
2
FAIRE-seq
1
RNA microarray
Assay category
880
DNA binding
622
Transcription
305
DNA accessibility
20
DNA methylation
11
3D chromatin structure
Target of assay
608
histone modification
607
histone
314
narrow histone mark
293
broad histone mark
181
control
93
transcription factor
27
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
February, 2021
284
August, 2017
238
October, 2019
193
May, 2020
120
July, 2018
115
May, 2019
101
August, 2021
95
February, 2023
95
June, 2019
82
November, 2017
74
October, 2018
July, 2019
66
May, 2022
57
April, 2019
48
December, 2017
40
March, 2020
40
May, 2021
40
May, 2024
40
November, 2019
26
November, 2018
25
February, 2020
23
October, 2017
19
April, 2020
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
2
January, 2018
1
August, 2022
1
May, 2023
Available data
1296
bam
1177
bigWig
817
bed narrowPeak
575
tsv
473
bigBed narrowPeak
377
fastq
238
tagAlign
145
bed broadPeak
137
bed bed3+
108
bigBed broadPeak
11
bed bedMethyl
11
bigBed bedMethyl
11
txt
10
bedpe bed3+
10
hic
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1859
Homo sapiens
Biosample type
1868
tissue
980
primary cell
547
cell line
368
in vitro differentiated cells
10
stem cell
Organ
499
pancreas
352
liver
293
heart
kidney
254
brain
126
blood vessel
126
vasculature
111
limb
93
connective tissue
92
adipose tissue
75
musculature of body
72
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
15
epithelium
8
bone element
8
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1818
AMP
31
T1D
19
LungMap
Genome assembly (visualization)
1183
GRCh38
1155
hg19
Lab
1705
AMP-T2D consortium
52
Kyle Gaulton, UCSD
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
7
inconsistent ontology term
2
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
month_released!
February, 2021
July, 2019
organ_slims!
kidney
BIOSAMPLE
ASSAY
1868 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
pCHi-C
snATAC-seq
WGBS
Hi-C
RRBS
MeRIP-seq
FAIRE-seq
RNA microarray
tissue
islet of Langerhans
71
292
68
6
1
4
7
3
4
1
liver
145
165
20
2
1
3
1
1
heart left ventricle
35
1
18
3
1
1
left cardiac atrium
40
18
1
body of pancreas
35
1
4
4
2
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