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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
73
ChIP-seq
11
total RNA-seq
6
ATAC-seq
6
WGBS
2
small RNA-seq
1
DNase-seq
1
RNA microarray
1
pCHi-C
Assay category
73
DNA binding
13
Transcription
7
DNA accessibility
6
DNA methylation
Target of assay
32
histone
32
histone modification
24
control
20
broad histone mark
17
transcription factor
12
narrow histone mark
5
RNA binding protein
Date released
February, 2021
57
August, 2017
23
October, 2018
10
July, 2019
2
February, 2020
1
August, 2021
1
February, 2023
1
January, 2018
June, 2019
1
March, 2020
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
1
October, 2019
Available data
53
bam
43
fastq
36
bigWig
13
tsv
12
bed narrowPeak
9
bigBed narrowPeak
8
tagAlign
5
bed bed3+
2
bed bedMethyl
2
bed broadPeak
2
bigBed bedMethyl
1
bigBed broadPeak
Organism
100
Homo sapiens
Biosample type
101
tissue
2
primary cell
1
in vitro differentiated cells
Organ
499
pancreas
360
liver
265
heart
223
kidney
212
brain
102
connective tissue
101
adipose tissue
80
blood vessel
80
vasculature
77
limb
66
artery
53
eye
43
musculature of body
43
nerve
25
spleen
20
lung
15
epithelium
8
bone element
8
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
101
AMP
Genome assembly (visualization)
37
hg19
35
GRCh38
Lab
101
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
month_released!
February, 2021
June, 2019
May, 2019
BIOSAMPLE
ASSAY
101 results
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ChIP-seq
total RNA-seq
ATAC-seq
WGBS
small RNA-seq
DNase-seq
RNA microarray
pCHi-C
tissue
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
12
5
1
1
1
omental fat pad
11
5
1
1
1
white adipose tissue
12
adipose tissue
2
1
3
3
1
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