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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
275
ChIP-seq
63
DNase-seq
24
total RNA-seq
6
ATAC-seq
4
Hi-C
4
small RNA-seq
2
pCHi-C
1
FAIRE-seq
1
RRBS
1
WGBS
Assay category
275
DNA binding
70
DNA accessibility
28
Transcription
4
3D chromatin structure
2
DNA methylation
Target of assay
233
histone
233
histone modification
129
narrow histone mark
104
broad histone mark
42
control
Date released
155
October, 2019
82
November, 2017
57
June, 2019
35
May, 2019
16
July, 2019
16
October, 2017
15
February, 2020
February, 2021
2
March, 2020
2
November, 2018
1
February, 2023
Available data
334
bam
293
bigWig
278
bed narrowPeak
200
bigBed narrowPeak
118
tagAlign
72
bed broadPeak
63
bed bed3+
63
bigBed broadPeak
30
tsv
12
fastq
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
381
Homo sapiens
Biosample type
381
tissue
21
primary cell
Organ
505
pancreas
360
liver
313
heart
291
kidney
265
brain
133
blood vessel
133
vasculature
116
limb
103
connective tissue
102
adipose tissue
82
musculature of body
73
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
15
epithelium
8
bone element
8
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
381
AMP
Genome assembly (visualization)
293
GRCh38
233
hg19
Lab
381
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
4
missing controlled_by
month_released!
February, 2021
BIOSAMPLE
ASSAY
381 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
Hi-C
small RNA-seq
pCHi-C
FAIRE-seq
RRBS
WGBS
tissue
tibial nerve
35
2
5
1
brain
20
14
1
1
1
tibial artery
23
2
1
1
layer of hippocampus
23
muscle of leg
7
13
1
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