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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1018
total RNA-seq
907
ChIP-seq
180
ATAC-seq
179
single cell RNA-seq
87
RNA microarray
27
WGBS
26
snATAC-seq
24
pCHi-C
16
Hi-C
16
small RNA-seq
15
DNase-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1213
Transcription
907
DNA binding
225
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Target of assay
628
histone modification
627
histone
324
narrow histone mark
303
broad histone mark
187
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
284
August, 2017
241
October, 2019
229
August, 2021
193
May, 2020
June, 2019
120
July, 2018
115
May, 2019
February, 2023
82
November, 2017
80
April, 2019
77
July, 2019
74
October, 2018
66
May, 2022
48
December, 2017
47
September, 2023
40
May, 2021
40
May, 2024
40
November, 2019
39
March, 2020
26
November, 2018
25
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1744
bam
1609
bigWig
1071
tsv
758
bed narrowPeak
398
bigBed narrowPeak
377
fastq
238
tagAlign
153
txt
64
xls
50
bed broadPeak
42
bed bed3+
25
bed bedMethyl
25
bigBed bedMethyl
13
bigBed broadPeak
11
hic
10
bedpe bed3+
6
csv
1
bedpe
1
tagAlign bed3+
Organism
2508
Homo sapiens
Biosample type
2517
tissue
945
primary cell
656
cell line
378
in vitro differentiated cells
10
stem cell
Organ
545
connective tissue
486
adipose tissue
483
pancreas
361
liver
250
heart
239
brain
231
kidney
150
bone element
95
blood vessel
95
vasculature
90
limb
50
musculature of body
43
nerve
36
artery
25
spleen
22
eye
20
lung
8
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
adrenal gland
1
epithelium
1
esophagus
1
large intestine
1
lymph node
1
pericardium
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2438
AMP
47
KPMP
19
LungMap
13
T1D
Genome assembly (visualization)
1661
GRCh38
1575
hg19
Lab
2183
AMP-T2D consortium
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
34
Kyle Gaulton, UCSD
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
90
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
month_released!
February, 2023
June, 2019
organ_slims!
adrenal gland
skin of body
BIOSAMPLE
ASSAY
2517 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
RNA microarray
WGBS
snATAC-seq
pCHi-C
Hi-C
small RNA-seq
DNase-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
287
71
56
6
5
4
3
1
1
1
4
adipose tissue
382
2
2
3
1
liver
167
145
20
1
3
1
1
1
2
1
kidney
49
27
75
64
6
1
1
1
bone element
84
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