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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1001
total RNA-seq
488
ChIP-seq
179
single cell RNA-seq
178
ATAC-seq
87
RNA microarray
27
WGBS
26
snATAC-seq
23
pCHi-C
16
Hi-C
13
DNase-seq
12
small RNA-seq
10
RRBS
4
MeRIP-seq
3
FAIRE-seq
3
snDrop-seq
Assay category
1192
Transcription
488
DNA binding
220
DNA accessibility
37
DNA methylation
16
3D chromatin structure
Target of assay
444
histone modification
443
histone
233
broad histone mark
narrow histone mark
162
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
234
August, 2017
229
August, 2021
166
May, 2020
June, 2019
120
July, 2018
101
October, 2019
February, 2023
66
July, 2019
66
May, 2022
64
May, 2019
63
October, 2018
57
April, 2019
47
September, 2023
46
December, 2017
40
May, 2021
40
November, 2019
36
March, 2020
25
May, 2024
24
November, 2018
19
April, 2020
15
May, 2023
13
February, 2020
8
January, 2021
7
December, 2018
7
October, 2017
6
April, 2018
6
September, 2017
5
January, 2019
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1402
bam
1267
bigWig
1049
tsv
428
bed narrowPeak
338
fastq
229
bigBed narrowPeak
153
txt
64
tagAlign
64
xls
34
bed bed3+
29
bed broadPeak
24
bed bedMethyl
24
bigBed bedMethyl
11
bigBed broadPeak
11
hic
10
bedpe bed3+
6
csv
1
bedpe
Organism
2063
Homo sapiens
Biosample type
2070
tissue
828
primary cell
637
cell line
323
in vitro differentiated cells
9
stem cell
Organ
532
connective tissue
474
adipose tissue
451
pancreas
317
liver
221
kidney
212
heart
150
bone element
brain
77
blood vessel
77
vasculature
75
limb
41
musculature of body
35
nerve
30
artery
23
spleen
20
eye
20
lung
8
skeleton
2
intestine
2
thymus
1
adrenal gland
1
epithelium
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1993
AMP
47
KPMP
19
LungMap
11
T1D
Genome assembly (visualization)
1336
GRCh38
1298
hg19
Lab
1751
AMP-T2D consortium
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
34
Kyle Gaulton, UCSD
25
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
87
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
19
missing controlled_by
Audit category:
3
inconsistent control read length
1
inconsistent assembly
month_released!
February, 2023
June, 2019
organ_slims!
brain
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
2070 results
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total RNA-seq
ChIP-seq
single cell RNA-seq
ATAC-seq
RNA microarray
WGBS
snATAC-seq
pCHi-C
Hi-C
DNase-seq
small RNA-seq
RRBS
MeRIP-seq
FAIRE-seq
snDrop-seq
tissue
islet of Langerhans
287
34
6
56
5
4
3
1
1
4
1
adipose tissue
382
1
2
3
1
liver
167
103
1
20
3
1
1
2
1
1
kidney
49
17
64
75
6
1
1
1
bone element
84
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