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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1018
total RNA-seq
818
ChIP-seq
179
single cell RNA-seq
178
DNase-seq
173
ATAC-seq
87
RNA microarray
27
WGBS
26
snATAC-seq
25
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1213
Transcription
818
DNA binding
381
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Target of assay
586
histone modification
585
histone
311
narrow histone mark
274
broad histone mark
155
control
79
transcription factor
17
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
284
August, 2017
242
October, 2019
229
August, 2021
193
May, 2020
163
June, 2019
120
July, 2018
115
May, 2019
February, 2023
82
November, 2017
80
April, 2019
77
July, 2019
October, 2018
66
May, 2022
48
December, 2017
47
September, 2023
40
March, 2020
40
May, 2021
40
May, 2024
40
November, 2019
26
November, 2018
25
February, 2020
October, 2017
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1818
bam
1713
bigWig
1072
tsv
864
bed narrowPeak
510
bigBed narrowPeak
302
fastq
224
tagAlign
209
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
153
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
1
bedpe
1
tagAlign bed3+
Organism
2576
Homo sapiens
Biosample type
2585
tissue
939
primary cell
656
cell line
378
in vitro differentiated cells
10
stem cell
Organ
522
connective tissue
463
adipose tissue
431
pancreas
361
liver
299
kidney
277
heart
248
brain
150
bone element
122
limb
98
blood vessel
98
vasculature
82
musculature of body
43
nerve
38
artery
25
eye
24
spleen
20
lung
18
ureter
8
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
epithelium
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2506
AMP
47
KPMP
19
LungMap
13
T1D
Genome assembly (visualization)
1765
GRCh38
1664
hg19
Lab
2252
AMP-T2D consortium
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
34
Kyle Gaulton, UCSD
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
Audit category:
91
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
22
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
month_released!
February, 2023
October, 2017
October, 2018
September, 2020
BIOSAMPLE
ASSAY
2585 results
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Clear Filters
total RNA-seq
ChIP-seq
single cell RNA-seq
DNase-seq
ATAC-seq
RNA microarray
WGBS
snATAC-seq
pCHi-C
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
287
71
6
1
56
5
4
3
1
1
4
adipose tissue
382
2
2
3
1
liver
167
145
1
2
20
3
1
1
1
1
kidney
49
27
64
13
75
6
1
1
1
bone element
84
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