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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1011
total RNA-seq
260
ChIP-seq
178
ATAC-seq
173
DNase-seq
173
single cell RNA-seq
87
RNA microarray
26
snATAC-seq
25
WGBS
24
pCHi-C
16
small RNA-seq
15
Hi-C
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1200
Transcription
381
DNA accessibility
260
DNA binding
36
DNA methylation
15
3D chromatin structure
Target of assay
histone modification
573
histone
306
narrow histone mark
267
broad histone mark
171
control
91
transcription factor
25
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
223
August, 2021
166
May, 2020
160
August, 2017
160
June, 2019
120
July, 2018
70
July, 2019
66
May, 2022
66
October, 2019
February, 2023
47
September, 2023
44
October, 2018
43
December, 2017
40
May, 2021
40
November, 2019
35
March, 2020
26
November, 2018
22
February, 2020
20
April, 2019
19
April, 2020
15
May, 2023
12
May, 2019
12
November, 2017
11
October, 2017
8
January, 2021
7
December, 2018
6
April, 2018
6
September, 2017
5
March, 2019
5
May, 2024
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
1
January, 2019
Available data
1408
bam
1234
bigWig
1058
tsv
390
bed narrowPeak
303
fastq
241
bigBed narrowPeak
188
bed bed3+
173
bed broadPeak
171
bigBed broadPeak
153
txt
64
xls
52
tagAlign
24
bed bedMethyl
24
bigBed bedMethyl
10
hic
9
bedpe bed3+
6
csv
1
bedpe
Organism
2007
Homo sapiens
Biosample type
2010
tissue
743
primary cell
552
cell line
266
in vitro differentiated cells
8
stem cell
Organ
513
connective tissue
455
adipose tissue
414
pancreas
291
liver
279
kidney
182
heart
150
bone element
80
brain
73
limb
57
musculature of body
44
blood vessel
vasculature
23
eye
20
lung
19
nerve
19
spleen
18
artery
18
ureter
8
skeleton
2
intestine
2
thymus
1
adrenal gland
1
epithelium
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1933
AMP
47
KPMP
19
LungMap
11
T1D
Genome assembly (visualization)
1314
GRCh38
1268
hg19
Lab
1711
AMP-T2D consortium
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
34
Kyle Gaulton, UCSD
19
Xin Sun, UCSD
5
Patrick T. Ellinor, Broad
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
89
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
18
missing controlled_by
month_released!
February, 2023
organ_slims!
vasculature
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
2010 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
small RNA-seq
Hi-C
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
adipose tissue
382
1
2
3
1
islet of Langerhans
287
20
57
1
6
5
4
3
1
1
4
liver
167
80
20
2
1
3
1
1
1
1
kidney
49
7
75
13
64
6
1
1
1
bone element
84
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