Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
125
ChIP-seq
92
single cell RNA-seq
30
DNase-seq
30
total RNA-seq
8
WGBS
7
pCHi-C
5
ATAC-seq
3
Hi-C
1
RRBS
1
small RNA-seq
Assay category
125
DNA binding
123
Transcription
35
DNA accessibility
9
DNA methylation
3
3D chromatin structure
Target of assay
97
histone
97
histone modification
57
broad histone mark
40
narrow histone mark
16
control
12
transcription factor
10
RNA binding protein
Date released
92
August, 2021
February, 2023
57
April, 2019
40
May, 2024
30
June, 2019
29
October, 2019
21
May, 2019
20
July, 2019
7
March, 2020
4
February, 2020
2
May, 2021
Available data
160
bigWig
141
bed narrowPeak
135
bam
112
tsv
91
bigBed narrowPeak
30
bed bed3+
30
bed broadPeak
30
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
3
bedpe bed3+
3
hic
Organism
302
Homo sapiens
Biosample type
302
tissue
66
cell line
18
primary cell
1
in vitro differentiated cells
Organ
546
connective tissue
487
adipose tissue
487
pancreas
361
liver
299
kidney
277
heart
264
brain
150
bone element
122
limb
98
blood vessel
98
vasculature
82
musculature of body
43
nerve
38
artery
25
eye
25
spleen
20
lung
18
ureter
8
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
epithelium
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
302
AMP
Genome assembly (visualization)
159
GRCh38
116
hg19
Lab
262
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
month_released!
February, 2023
organ_slims!
embryo
BIOSAMPLE
ASSAY
302 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
single cell RNA-seq
DNase-seq
total RNA-seq
WGBS
pCHi-C
ATAC-seq
Hi-C
RRBS
small RNA-seq
tissue
heart left ventricle
35
18
3
3
4
1
2
1
1
left cardiac atrium
40
18
1
heart
14
18
4
1
1
1
heart right ventricle
13
17
1
1
2
1
1
right cardiac atrium
6
18
1
1
+ See 12 more…
See all biosamples
Download