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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
888
total RNA-seq
763
ChIP-seq
258
ATAC-seq
180
single cell RNA-seq
178
DNase-seq
87
RNA microarray
28
snATAC-seq
27
WGBS
25
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1084
Transcription
763
DNA binding
468
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Target of assay
601
histone modification
600
histone
303
broad histone mark
297
narrow histone mark
164
control
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
261
August, 2017
242
October, 2019
229
August, 2021
May, 2020
163
June, 2019
120
July, 2018
111
May, 2019
95
February, 2023
82
November, 2017
77
July, 2019
74
April, 2019
66
May, 2022
59
October, 2018
47
September, 2023
40
March, 2020
40
May, 2021
40
November, 2019
35
May, 2024
25
February, 2020
23
October, 2017
19
April, 2020
19
November, 2018
17
December, 2017
15
May, 2023
8
January, 2021
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
December, 2018
4
November, 2020
3
December, 2019
January, 2018
1
August, 2022
Available data
1625
bam
1507
bigWig
933
tsv
882
bed narrowPeak
496
bigBed narrowPeak
298
fastq
213
bed broadPeak
192
bed bed3+
188
tagAlign
176
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2479
Homo sapiens
Biosample type
2488
tissue
931
primary cell
341
in vitro differentiated cells
299
cell line
9
stem cell
Organ
529
connective tissue
488
pancreas
470
adipose tissue
301
heart
298
kidney
265
brain
158
bone element
130
blood vessel
130
vasculature
129
liver
122
limb
81
musculature of body
72
artery
56
eye
43
nerve
20
lung
19
spleen
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2391
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1604
GRCh38
1495
hg19
Lab
2141
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
35
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
91
inconsistent ontology term
9
audit script error
Audit category:
8
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
month_released!
January, 2018
May, 2020
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
2488 results
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total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
292
64
68
6
1
7
4
3
1
1
4
adipose tissue
382
2
2
3
1
kidney
49
26
75
64
13
6
1
1
1
liver
24
58
20
1
2
3
1
1
1
1
bone element
84
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