Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
716
ChIP-seq
293
total RNA-seq
191
ATAC-seq
174
single cell RNA-seq
169
DNase-seq
86
RNA microarray
22
pCHi-C
17
WGBS
17
snATAC-seq
12
Hi-C
12
small RNA-seq
9
RRBS
3
snDrop-seq
2
FAIRE-seq
Assay category
716
DNA binding
479
Transcription
379
DNA accessibility
26
DNA methylation
12
3D chromatin structure
Target of assay
522
histone modification
521
histone
279
narrow histone mark
242
broad histone mark
134
control
60
transcription factor
15
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
237
October, 2019
226
August, 2021
193
May, 2020
158
June, 2019
113
May, 2019
101
February, 2021
82
November, 2017
80
April, 2019
80
August, 2017
76
February, 2023
61
July, 2019
48
December, 2017
47
September, 2023
42
May, 2022
40
May, 2024
29
March, 2020
22
February, 2020
19
April, 2020
18
November, 2018
17
October, 2017
14
May, 2023
7
December, 2018
7
January, 2019
3
December, 2019
3
May, 2021
January, 2018
Available data
980
bam
917
bigWig
848
bed narrowPeak
489
bigBed narrowPeak
343
tsv
214
tagAlign
190
bed broadPeak
172
bed bed3+
168
bigBed broadPeak
151
txt
121
fastq
64
xls
17
bed bedMethyl
17
bigBed bedMethyl
8
hic
7
bedpe bed3+
6
csv
5
bed bed3
1
tagAlign bed3+
Organism
1722
Homo sapiens
Biosample type
1723
tissue
707
primary cell
569
cell line
290
in vitro differentiated cells
8
stem cell
Organ
connective tissue
pancreas
487
adipose tissue
361
liver
313
heart
299
kidney
265
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
81
musculature of body
73
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1656
AMP
47
KPMP
19
LungMap
1
T1D
Genome assembly (visualization)
993
GRCh38
859
hg19
Lab
1434
AMP-T2D consortium
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
1
Kyle Gaulton, UCSD
Audit category:
90
inconsistent ontology term
27
inconsistent control
8
audit script error
Audit category:
4
missing controlled_by
Audit category:
1
inconsistent control read length
month_released!
January, 2018
organ_slims!
adrenal gland
connective tissue
pancreas
BIOSAMPLE
ASSAY
1723 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
pCHi-C
WGBS
snATAC-seq
Hi-C
small RNA-seq
RRBS
snDrop-seq
FAIRE-seq
tissue
liver
145
167
20
1
2
1
3
1
1
1
kidney
27
49
75
64
13
6
1
1
1
bone element
84
heart left ventricle
35
3
2
18
3
1
4
1
1
left cardiac atrium
40
18
1
+ See 164 more…
See all biosamples
Download