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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
966
total RNA-seq
740
ChIP-seq
144
ATAC-seq
85
RNA microarray
83
DNase-seq
23
single cell RNA-seq
22
pCHi-C
22
snATAC-seq
19
WGBS
14
small RNA-seq
12
Hi-C
9
RRBS
4
MeRIP-seq
3
FAIRE-seq
Assay category
1003
Transcription
740
DNA binding
252
DNA accessibility
28
DNA methylation
12
3D chromatin structure
Target of assay
513
histone modification
512
histone
276
narrow histone mark
236
broad histone mark
165
control
81
transcription factor
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
537
February, 2021
282
August, 2017
230
October, 2019
193
May, 2020
120
July, 2018
92
May, 2019
82
November, 2017
68
June, 2019
66
May, 2022
63
October, 2018
59
February, 2023
53
July, 2019
46
December, 2017
40
November, 2019
38
May, 2021
33
March, 2020
26
November, 2018
23
October, 2017
22
February, 2020
19
April, 2020
9
August, 2021
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
January, 2018
1
August, 2022
1
May, 2023
Available data
1660
bam
1505
bigWig
953
tsv
642
bed narrowPeak
371
bigBed narrowPeak
362
fastq
238
tagAlign
118
bed broadPeak
108
bed bed3+
95
txt
81
bigBed broadPeak
17
bed bedMethyl
17
bigBed bedMethyl
7
bedpe bed3+
7
hic
5
bed bed3
1
bedpe
1
csv
1
tagAlign bed3+
Organism
2137
Homo sapiens
Biosample type
2146
tissue
1032
primary cell
511
cell line
378
in vitro differentiated cells
9
stem cell
Organ
541
connective tissue
497
pancreas
482
adipose tissue
359
liver
heart
kidney
265
brain
158
bone element
130
blood vessel
130
vasculature
122
limb
81
musculature of body
72
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2096
AMP
31
T1D
19
LungMap
Genome assembly (visualization)
1531
hg19
1486
GRCh38
Lab
2023
AMP-T2D consortium
52
Kyle Gaulton, UCSD
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
91
inconsistent ontology term
27
inconsistent control
2
audit script error
Audit category:
25
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
month_released!
January, 2018
organ_slims!
heart
kidney
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
2146 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
RNA microarray
DNase-seq
single cell RNA-seq
pCHi-C
snATAC-seq
WGBS
small RNA-seq
Hi-C
RRBS
MeRIP-seq
FAIRE-seq
tissue
islet of Langerhans
292
69
68
1
6
4
7
3
1
4
1
adipose tissue
382
2
2
1
3
liver
167
144
20
2
1
1
3
1
1
1
bone element
84
bone tissue
58
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