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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
457
total RNA-seq
74
ChIP-seq
17
ATAC-seq
6
WGBS
2
DNase-seq
2
RNA microarray
2
small RNA-seq
1
pCHi-C
Assay category
459
Transcription
74
DNA binding
19
DNA accessibility
6
DNA methylation
Target of assay
33
histone
33
histone modification
24
control
20
broad histone mark
17
transcription factor
13
narrow histone mark
5
RNA binding protein
Date released
444
February, 2021
57
August, 2017
23
October, 2018
15
February, 2023
10
July, 2019
2
February, 2020
2
October, 2019
1
August, 2021
1
December, 2019
January, 2018
1
June, 2019
1
March, 2020
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
Available data
498
bam
480
bigWig
460
tsv
43
fastq
25
bed narrowPeak
10
bigBed narrowPeak
8
tagAlign
6
bed bed3+
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
Organism
560
Homo sapiens
Biosample type
561
tissue
445
primary cell
121
in vitro differentiated cells
79
cell line
1
stem cell
Organ
546
connective tissue
505
pancreas
487
adipose tissue
361
liver
313
heart
299
kidney
265
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
81
musculature of body
73
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
561
AMP
Genome assembly (visualization)
493
hg19
480
GRCh38
Lab
561
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
Audit category:
12
missing controlled_by
month_released!
January, 2018
BIOSAMPLE
ASSAY
561 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
DNase-seq
RNA microarray
small RNA-seq
pCHi-C
tissue
adipose tissue
382
2
2
3
1
bone tissue
58
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
7
12
1
1
1
omental fat pad
5
11
1
2
1
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