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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
991
total RNA-seq
601
ChIP-seq
249
ATAC-seq
178
DNase-seq
177
single cell RNA-seq
87
RNA microarray
28
snATAC-seq
27
WGBS
24
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1184
Transcription
601
DNA binding
459
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Target of assay
622
histone modification
621
histone
322
narrow histone mark
broad histone mark
186
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
229
August, 2021
211
August, 2017
203
October, 2019
193
May, 2020
163
June, 2019
120
July, 2018
95
February, 2023
77
July, 2019
66
May, 2022
59
May, 2019
55
October, 2018
47
September, 2023
45
December, 2017
43
April, 2019
40
March, 2020
May, 2021
40
November, 2017
40
November, 2019
26
November, 2018
25
February, 2020
20
May, 2024
19
April, 2020
May, 2023
13
October, 2017
8
January, 2021
7
December, 2018
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
January, 2019
2
January, 2018
1
August, 2022
Available data
1644
bam
1479
bigWig
1038
tsv
729
bed narrowPeak
355
bigBed narrowPeak
329
fastq
199
bed bed3+
193
bed broadPeak
176
bigBed broadPeak
162
tagAlign
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2411
Homo sapiens
Biosample type
2416
tissue
826
primary cell
599
cell line
216
in vitro differentiated cells
9
stem cell
Organ
526
connective tissue
467
adipose tissue
427
pancreas
336
liver
275
kidney
254
heart
195
brain
158
bone element
97
blood vessel
97
vasculature
88
limb
66
musculature of body
59
artery
56
eye
27
nerve
20
lung
18
spleen
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
2320
AMP
47
KPMP
30
T1D
19
LungMap
Genome assembly (visualization)
1565
GRCh38
1516
hg19
Lab
2100
AMP-T2D consortium
128
Katalin Susztak, Upenn
50
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
20
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
91
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
22
missing controlled_by
Audit category:
3
inconsistent control read length
month_released!
January, 2019
May, 2021
May, 2023
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
2416 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
256
57
68
1
6
7
4
3
1
1
4
adipose tissue
381
2
3
3
1
liver
167
123
20
2
1
3
1
1
1
1
kidney
49
17
64
13
61
6
1
1
1
bone element
84
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