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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
283
total RNA-seq
130
ChIP-seq
63
ATAC-seq
11
snATAC-seq
8
DNase-seq
6
WGBS
6
single cell RNA-seq
4
Hi-C
4
MeRIP-seq
2
FAIRE-seq
2
RRBS
2
pCHi-C
2
small RNA-seq
Assay category
291
Transcription
130
DNA binding
84
DNA accessibility
8
DNA methylation
4
3D chromatin structure
Target of assay
73
histone
73
histone modification
41
broad histone mark
36
control
32
narrow histone mark
23
transcription factor
8
RNA binding protein
3
other context
3
other post-translational modification
2
nucleotide modification
Date released
147
August, 2017
120
July, 2018
51
October, 2018
39
November, 2019
37
May, 2021
24
May, 2022
18
February, 2023
16
November, 2018
10
March, 2020
8
January, 2021
7
December, 2018
January, 2019
6
April, 2018
6
July, 2019
6
October, 2017
6
September, 2017
5
March, 2019
4
June, 2019
4
November, 2020
3
October, 2019
2
August, 2021
2
May, 2019
1
August, 2022
1
February, 2020
Available data
446
bam
383
bigWig
276
tsv
230
fastq
131
bed narrowPeak
69
bigBed narrowPeak
28
bed bed3+
21
bed broadPeak
16
tagAlign
8
bed bedMethyl
8
bigBed bedMethyl
7
bigBed broadPeak
6
txt
3
bedpe bed3+
3
hic
1
bedpe
Organism
516
Homo sapiens
Biosample type
523
tissue
346
primary cell
92
cell line
3
in vitro differentiated cells
Organ
546
connective tissue
505
pancreas
487
adipose tissue
361
liver
313
heart
285
kidney
265
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
82
musculature of body
73
artery
56
eye
43
nerve
20
lung
18
spleen
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
493
AMP
30
T1D
Genome assembly (visualization)
421
hg19
396
GRCh38
Lab
460
AMP-T2D consortium
51
Kyle Gaulton, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
1
audit script error
Audit category:
10
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
month_released!
January, 2019
May, 2023
BIOSAMPLE
ASSAY
523 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
snATAC-seq
DNase-seq
WGBS
single cell RNA-seq
Hi-C
MeRIP-seq
FAIRE-seq
RRBS
pCHi-C
small RNA-seq
tissue
islet of Langerhans
278
50
58
7
1
6
3
4
1
1
body of pancreas
3
35
4
4
2
2
pancreas
2
16
4
2
2
1
1
1
1
spleen
13
1
1
2
1
endocrine pancreas
16
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