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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
884
total RNA-seq
712
ChIP-seq
217
ATAC-seq
180
single cell RNA-seq
171
DNase-seq
87
RNA microarray
28
snATAC-seq
27
WGBS
20
pCHi-C
16
small RNA-seq
15
Hi-C
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1080
Transcription
712
DNA binding
420
DNA accessibility
38
DNA methylation
15
3D chromatin structure
Target of assay
460
histone modification
459
histone
264
broad histone mark
195
narrow histone mark
160
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
284
August, 2017
229
August, 2021
October, 2019
193
May, 2020
160
June, 2019
July, 2018
115
May, 2019
82
November, 2017
80
April, 2019
77
July, 2019
74
October, 2018
66
May, 2022
64
February, 2023
48
December, 2017
47
September, 2023
40
May, 2021
40
May, 2024
40
November, 2019
39
March, 2020
26
November, 2018
24
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1602
bam
1493
bigWig
946
tsv
803
bed narrowPeak
511
bigBed narrowPeak
375
fastq
206
bed broadPeak
198
bed bed3+
189
tagAlign
169
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
10
hic
9
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
Organism
2370
Homo sapiens
Biosample type
2379
tissue
1001
primary cell
632
cell line
386
in vitro differentiated cells
10
stem cell
Organ
545
connective tissue
487
adipose tissue
382
pancreas
355
liver
305
heart
295
kidney
179
brain
158
bone element
107
blood vessel
107
vasculature
82
musculature of body
53
limb
47
artery
eye
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
large intestine
1
nerve
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2282
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1579
GRCh38
1446
hg19
Lab
2027
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
89
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
month_released!
July, 2018
October, 2019
organ_slims!
eye
large intestine
BIOSAMPLE
ASSAY
2379 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
small RNA-seq
Hi-C
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
adipose tissue
382
2
2
3
1
liver
166
140
20
1
2
3
1
1
1
1
islet of Langerhans
158
50
55
6
1
7
3
1
1
4
kidney
49
23
75
64
13
6
1
1
1
bone element
84
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