Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
281
total RNA-seq
117
ChIP-seq
62
ATAC-seq
11
snATAC-seq
7
DNase-seq
6
single cell RNA-seq
4
Hi-C
4
MeRIP-seq
4
WGBS
2
FAIRE-seq
1
pCHi-C
Assay category
287
Transcription
117
DNA binding
82
DNA accessibility
4
3D chromatin structure
4
DNA methylation
Target of assay
73
histone
73
histone modification
41
broad histone mark
32
narrow histone mark
29
control
17
transcription factor
8
RNA binding protein
2
nucleotide modification
Date released
147
August, 2017
120
July, 2018
51
October, 2018
39
November, 2019
37
May, 2021
24
May, 2022
18
February, 2023
9
March, 2020
8
January, 2021
7
November, 2018
6
April, 2018
July, 2019
6
September, 2017
5
March, 2019
5
October, 2017
4
June, 2019
4
November, 2020
3
October, 2019
2
August, 2021
2
May, 2019
1
August, 2022
1
February, 2020
Available data
425
bam
369
bigWig
271
tsv
213
fastq
123
bed narrowPeak
62
bigBed narrowPeak
27
bed bed3+
20
bed broadPeak
16
tagAlign
6
bigBed broadPeak
6
txt
4
bed bedMethyl
4
bigBed bedMethyl
3
bedpe bed3+
3
hic
1
bedpe
Organism
492
Homo sapiens
Biosample type
499
tissue
346
primary cell
92
cell line
3
in vitro differentiated cells
Organ
536
connective tissue
499
pancreas
477
adipose tissue
353
liver
293
heart
281
kidney
254
brain
158
bone element
126
blood vessel
126
vasculature
117
limb
75
musculature of body
72
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
469
AMP
30
T1D
Genome assembly (visualization)
407
hg19
382
GRCh38
Lab
436
AMP-T2D consortium
51
Kyle Gaulton, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
1
audit script error
Audit category:
10
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
month_released!
July, 2019
May, 2023
BIOSAMPLE
ASSAY
499 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
snATAC-seq
DNase-seq
single cell RNA-seq
Hi-C
MeRIP-seq
WGBS
FAIRE-seq
pCHi-C
tissue
islet of Langerhans
278
50
58
7
1
6
3
4
1
body of pancreas
1
35
4
4
2
pancreas
2
16
4
2
1
2
1
1
endocrine pancreas
16
Download