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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
950
total RNA-seq
873
ChIP-seq
179
ATAC-seq
116
single cell RNA-seq
110
DNase-seq
84
RNA microarray
25
pCHi-C
21
snATAC-seq
15
WGBS
11
Hi-C
5
RRBS
4
MeRIP-seq
2
FAIRE-seq
Assay category
1066
Transcription
873
DNA binding
312
DNA accessibility
20
DNA methylation
11
3D chromatin structure
Target of assay
602
histone modification
601
histone
312
narrow histone mark
289
broad histone mark
180
control
93
transcription factor
27
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
537
February, 2021
277
August, 2017
238
October, 2019
193
May, 2020
120
July, 2018
115
May, 2019
100
August, 2021
95
February, 2023
95
June, 2019
82
November, 2017
74
October, 2018
July, 2019
66
May, 2022
57
April, 2019
48
December, 2017
40
March, 2020
40
May, 2021
40
May, 2024
40
November, 2019
26
November, 2018
24
February, 2020
23
October, 2017
18
April, 2020
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
2
January, 2018
1
August, 2022
1
May, 2023
Available data
1741
bam
1615
bigWig
1018
tsv
819
bed narrowPeak
467
bigBed narrowPeak
370
fastq
231
tagAlign
139
bed broadPeak
137
bed bed3+
108
bigBed broadPeak
95
txt
11
bed bedMethyl
11
bigBed bedMethyl
10
bedpe bed3+
10
hic
5
bed bed3
1
bedpe
1
csv
1
tagAlign bed3+
Organism
2395
Homo sapiens
Biosample type
2395
tissue
1028
primary cell
639
cell line
394
in vitro differentiated cells
8
stem cell
Organ
536
connective tissue
492
pancreas
477
adipose tissue
353
liver
kidney
293
heart
254
brain
158
bone element
126
blood vessel
126
vasculature
117
limb
75
musculature of body
72
artery
56
eye
43
nerve
25
spleen
19
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
skin of body
1
small intestine
spinal cord
1
stomach
1
urinary bladder
Project
2346
AMP
31
T1D
18
LungMap
Genome assembly (visualization)
1629
GRCh38
1601
hg19
Lab
2233
AMP-T2D consortium
52
Kyle Gaulton, UCSD
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
18
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
91
inconsistent ontology term
27
inconsistent control
2
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
month_released!
July, 2019
organ_slims!
kidney
spinal cord
BIOSAMPLE
ASSAY
2395 results
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total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
pCHi-C
snATAC-seq
WGBS
Hi-C
RRBS
MeRIP-seq
FAIRE-seq
tissue
islet of Langerhans
292
71
68
6
1
4
7
3
4
1
adipose tissue
382
2
3
1
3
liver
165
145
20
1
2
1
3
1
1
bone element
84
heart left ventricle
1
35
18
3
1
1
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