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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
208
ChIP-seq
27
DNase-seq
13
total RNA-seq
2
ATAC-seq
2
pCHi-C
Assay category
208
DNA binding
29
DNA accessibility
13
Transcription
Target of assay
183
histone
183
histone modification
113
narrow histone mark
70
broad histone mark
25
control
Date released
84
October, 2019
82
November, 2017
28
May, 2019
25
June, 2019
16
October, 2017
12
February, 2020
July, 2019
2
March, 2020
2
November, 2018
1
February, 2023
Available data
215
bam
191
bigWig
190
bed narrowPeak
117
tagAlign
115
bigBed narrowPeak
36
bed broadPeak
27
bed bed3+
27
bigBed broadPeak
15
tsv
12
fastq
1
bed bed3
1
tagAlign bed3+
Organism
252
Homo sapiens
Biosample type
252
tissue
14
primary cell
Organ
537
connective tissue
499
pancreas
478
adipose tissue
353
liver
295
kidney
293
heart
254
brain
158
bone element
126
blood vessel
126
vasculature
117
limb
75
musculature of body
72
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
252
AMP
Genome assembly (visualization)
193
GRCh38
132
hg19
Lab
252
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
month_released!
July, 2019
organ_slims!
pituitary gland
BIOSAMPLE
ASSAY
252 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
pCHi-C
tissue
brain
20
14
1
1
layer of hippocampus
23
caudate nucleus
15
1
1
substantia nigra
16
1
angular gyrus
15
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