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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
613
total RNA-seq
229
ChIP-seq
27
ATAC-seq
9
WGBS
6
DNase-seq
2
pCHi-C
1
Hi-C
1
RNA microarray
1
RRBS
1
single cell RNA-seq
Assay category
614
Transcription
229
DNA binding
33
DNA accessibility
10
DNA methylation
1
3D chromatin structure
Target of assay
103
histone modification
102
histone
70
control
57
narrow histone mark
56
transcription factor
45
broad histone mark
7
RNA binding protein
2
chromatin remodeller
Date released
445
February, 2021
193
May, 2020
111
August, 2017
48
December, 2017
40
May, 2022
23
October, 2018
July, 2019
8
November, 2018
8
October, 2019
4
March, 2020
3
February, 2020
1
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
1
May, 2023
1
November, 2019
1
October, 2017
Available data
769
bam
729
bigWig
594
tsv
126
bed narrowPeak
126
fastq
78
tagAlign
59
bigBed narrowPeak
12
bed bed3+
6
bed broadPeak
5
bigBed broadPeak
3
bed bedMethyl
3
bigBed bedMethyl
1
bedpe bed3+
1
csv
1
hic
Organism
889
Homo sapiens
Biosample type
890
tissue
401
cell line
112
in vitro differentiated cells
42
primary cell
1
stem cell
Organ
537
connective tissue
499
pancreas
478
adipose tissue
353
liver
295
kidney
293
heart
254
brain
158
bone element
126
blood vessel
126
vasculature
117
limb
75
musculature of body
72
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
890
AMP
Genome assembly (visualization)
733
hg19
701
GRCh38
Lab
850
AMP-T2D consortium
40
Karen Mohlke, UNC
Audit category:
27
inconsistent control
1
inconsistent ontology term
Audit category:
12
missing controlled_by
Audit category:
1
inconsistent control read length
month_released!
July, 2019
BIOSAMPLE
ASSAY
890 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
DNase-seq
pCHi-C
Hi-C
RNA microarray
RRBS
single cell RNA-seq
tissue
adipose tissue
382
2
3
3
1
liver
165
145
20
3
2
1
1
1
1
bone tissue
58
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
3
12
1
1
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