Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
873
total RNA-seq
734
ChIP-seq
221
ATAC-seq
87
RNA microarray
87
single cell RNA-seq
28
snATAC-seq
22
pCHi-C
19
WGBS
15
DNase-seq
15
small RNA-seq
13
Hi-C
10
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
975
Transcription
734
DNA binding
268
DNA accessibility
29
DNA methylation
13
3D chromatin structure
Target of assay
506
histone modification
505
histone
259
narrow histone mark
246
broad histone mark
148
control
82
transcription factor
18
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
284
August, 2017
234
October, 2019
May, 2020
137
August, 2021
June, 2019
120
July, 2018
94
May, 2019
82
November, 2017
74
October, 2018
66
May, 2022
59
February, 2023
57
July, 2019
48
December, 2017
47
September, 2023
40
November, 2019
38
May, 2021
33
March, 2020
26
November, 2018
23
April, 2019
23
October, 2017
22
February, 2020
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1446
bam
1309
bigWig
822
tsv
648
bed narrowPeak
377
fastq
337
bigBed narrowPeak
188
tagAlign
157
txt
64
xls
50
bed broadPeak
42
bed bed3+
18
bed bedMethyl
18
bigBed bedMethyl
13
bigBed broadPeak
8
hic
7
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2126
Homo sapiens
Biosample type
2135
tissue
881
primary cell
595
cell line
393
in vitro differentiated cells
10
stem cell
Organ
546
connective tissue
501
pancreas
487
adipose tissue
heart
240
brain
231
kidney
168
liver
158
bone element
130
blood vessel
130
vasculature
90
limb
71
artery
53
eye
50
musculature of body
43
nerve
25
spleen
20
lung
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2038
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1370
GRCh38
1350
hg19
Lab
1823
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
90
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
month_released!
June, 2019
May, 2020
organ_slims!
heart
BIOSAMPLE
ASSAY
2135 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
RNA microarray
single cell RNA-seq
snATAC-seq
pCHi-C
WGBS
DNase-seq
small RNA-seq
Hi-C
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
292
71
68
6
7
4
1
3
1
1
4
adipose tissue
382
2
3
1
3
kidney
49
27
75
64
6
1
1
1
liver
24
95
20
1
1
3
2
1
1
1
bone element
84
+ See 144 more…
See all biosamples
Download