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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
576
total RNA-seq
522
ChIP-seq
243
ATAC-seq
177
single cell RNA-seq
86
RNA microarray
28
snATAC-seq
24
pCHi-C
21
WGBS
16
Hi-C
14
DNase-seq
14
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
767
Transcription
522
DNA binding
289
DNA accessibility
32
DNA methylation
16
3D chromatin structure
Target of assay
595
histone modification
594
histone
narrow histone mark
283
broad histone mark
163
control
77
transcription factor
23
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
228
August, 2021
189
August, 2017
166
May, 2020
June, 2019
120
July, 2018
112
October, 2019
101
February, 2021
94
February, 2023
82
May, 2019
67
July, 2019
66
May, 2022
57
April, 2019
54
November, 2017
47
September, 2023
46
December, 2017
40
May, 2021
40
October, 2018
39
November, 2019
37
March, 2020
25
May, 2024
25
November, 2018
23
February, 2020
20
October, 2017
19
April, 2020
May, 2023
8
January, 2021
7
December, 2018
6
April, 2018
6
September, 2017
5
January, 2019
5
March, 2019
4
November, 2020
3
December, 2019
1
August, 2022
1
January, 2018
Available data
1005
bam
863
bigWig
619
tsv
545
bed narrowPeak
307
fastq
282
bigBed narrowPeak
157
txt
123
tagAlign
64
xls
34
bed broadPeak
31
bed bed3+
23
bed bedMethyl
23
bigBed bedMethyl
12
bigBed broadPeak
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
Organism
1737
Homo sapiens
Biosample type
1743
tissue
907
primary cell
643
cell line
258
in vitro differentiated cells
8
stem cell
Organ
connective tissue
474
adipose tissue
469
pancreas
317
liver
248
heart
207
kidney
158
bone element
126
brain
112
blood vessel
112
vasculature
75
limb
65
artery
51
eye
41
musculature of body
35
nerve
23
spleen
20
lung
16
skeleton
15
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1648
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
956
GRCh38
890
hg19
Lab
1420
AMP-T2D consortium
128
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
25
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
87
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
10
missing controlled_by
Audit category:
3
inconsistent control read length
1
inconsistent assembly
month_released!
June, 2019
May, 2023
organ_slims!
connective tissue
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
1743 results
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total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
RNA microarray
snATAC-seq
pCHi-C
WGBS
Hi-C
DNase-seq
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
292
34
68
6
7
4
3
1
1
1
4
liver
167
103
20
1
1
3
1
2
1
1
kidney
49
17
64
61
6
1
1
1
bone element
84
heart left ventricle
3
26
2
18
1
4
1
1
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