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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
676
ChIP-seq
464
total RNA-seq
233
ATAC-seq
179
single cell RNA-seq
86
RNA microarray
28
snATAC-seq
23
pCHi-C
17
WGBS
15
Hi-C
11
small RNA-seq
10
DNase-seq
10
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
676
DNA binding
654
Transcription
275
DNA accessibility
27
DNA methylation
15
3D chromatin structure
Target of assay
526
histone
526
histone modification
268
narrow histone mark
258
broad histone mark
117
control
38
transcription factor
21
RNA binding protein
3
other context
other post-translational modification
2
nucleotide modification
Date released
235
October, 2019
228
August, 2021
173
August, 2017
June, 2019
158
February, 2021
120
July, 2018
115
May, 2019
94
February, 2023
82
November, 2017
80
April, 2019
59
July, 2019
51
October, 2018
47
September, 2023
40
May, 2021
40
May, 2024
39
November, 2019
36
March, 2020
26
May, 2022
22
February, 2020
22
October, 2017
19
April, 2020
15
November, 2018
14
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
1
August, 2022
1
January, 2018
Available data
1014
bam
919
bigWig
693
bed narrowPeak
523
tsv
337
bigBed narrowPeak
248
fastq
160
tagAlign
157
txt
64
xls
45
bed broadPeak
31
bed bed3+
22
bed bedMethyl
22
bigBed bedMethyl
10
hic
9
bedpe bed3+
9
bigBed broadPeak
5
bed bed3
5
csv
1
bedpe
1
tagAlign bed3+
Organism
1755
Homo sapiens
Biosample type
1763
tissue
1019
primary cell
378
in vitro differentiated cells
261
cell line
10
stem cell
Organ
546
connective tissue
501
pancreas
adipose tissue
liver
286
heart
240
brain
231
kidney
158
bone element
130
blood vessel
130
vasculature
90
limb
71
artery
53
eye
50
musculature of body
43
nerve
22
spleen
20
lung
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1666
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1034
GRCh38
914
hg19
Lab
1451
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
89
inconsistent ontology term
9
audit script error
Audit category:
14
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
month_released!
June, 2019
organ_slims!
adipose tissue
liver
target.investigated_as!
other post-translational modification
BIOSAMPLE
ASSAY
1763 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
RNA microarray
snATAC-seq
pCHi-C
WGBS
Hi-C
small RNA-seq
DNase-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
71
292
68
6
7
4
3
1
1
1
4
kidney
27
49
75
64
6
1
1
1
bone element
84
heart left ventricle
35
3
2
18
1
4
1
1
bone tissue
58
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