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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
861
total RNA-seq
752
ChIP-seq
239
ATAC-seq
179
single cell RNA-seq
87
RNA microarray
28
snATAC-seq
23
WGBS
23
pCHi-C
15
Hi-C
13
small RNA-seq
11
DNase-seq
10
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1053
Transcription
752
DNA binding
282
DNA accessibility
33
DNA methylation
15
3D chromatin structure
Target of assay
558
histone
558
histone modification
280
narrow histone mark
278
broad histone mark
141
control
55
transcription factor
26
RNA binding protein
3
other context
3
other post-translational modification
2
nucleotide modification
Date released
544
February, 2021
236
October, 2019
230
August, 2017
229
August, 2021
June, 2019
120
July, 2018
115
May, 2019
95
February, 2023
82
November, 2017
80
April, 2019
74
October, 2018
69
July, 2019
47
September, 2023
40
May, 2021
40
May, 2024
40
November, 2019
36
March, 2020
26
May, 2022
24
February, 2020
23
October, 2017
19
April, 2020
19
November, 2018
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1456
bam
1344
bigWig
921
tsv
708
bed narrowPeak
349
bigBed narrowPeak
294
fastq
168
tagAlign
157
txt
64
xls
47
bed broadPeak
36
bed bed3+
24
bed bedMethyl
24
bigBed bedMethyl
10
bigBed broadPeak
10
hic
9
bedpe bed3+
5
bed bed3
5
csv
1
bedpe
1
tagAlign bed3+
Organism
2243
Homo sapiens
Biosample type
2252
tissue
1021
primary cell
379
in vitro differentiated cells
261
cell line
10
stem cell
Organ
546
connective tissue
501
pancreas
487
adipose tissue
liver
286
heart
240
brain
231
kidney
158
bone element
130
blood vessel
130
vasculature
90
limb
71
artery
53
eye
50
musculature of body
43
nerve
25
spleen
20
lung
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
stomach
1
urinary bladder
Project
2155
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1458
GRCh38
1340
hg19
Lab
1940
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
89
inconsistent ontology term
9
audit script error
Audit category:
26
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
month_released!
June, 2019
organ_slims!
liver
stomach
organ_slims!!
stomach
BIOSAMPLE
ASSAY
2252 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
Hi-C
small RNA-seq
DNase-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
292
71
68
6
7
4
3
1
1
1
4
adipose tissue
382
2
3
3
1
kidney
49
27
75
64
6
1
1
1
bone element
84
heart left ventricle
3
35
2
18
4
1
1
1
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