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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
457
total RNA-seq
102
ChIP-seq
43
ATAC-seq
6
DNase-seq
6
WGBS
2
single cell RNA-seq
2
small RNA-seq
1
RNA microarray
Assay category
461
Transcription
102
DNA binding
49
DNA accessibility
6
DNA methylation
Target of assay
53
histone
53
histone modification
34
broad histone mark
31
control
19
narrow histone mark
18
transcription factor
6
RNA binding protein
Date released
444
February, 2021
57
August, 2017
36
February, 2023
28
October, 2019
23
October, 2018
11
July, 2019
5
May, 2019
4
February, 2020
3
August, 2021
3
June, 2019
1
January, 2018
March, 2020
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
Available data
532
bam
508
bigWig
460
tsv
75
bed narrowPeak
43
fastq
35
bigBed narrowPeak
10
bed bed3+
8
tagAlign
7
bed broadPeak
6
bigBed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
Organism
618
Homo sapiens
Biosample type
619
tissue
97
in vitro differentiated cells
66
cell line
41
primary cell
Organ
546
connective tissue
496
pancreas
487
adipose tissue
358
liver
306
heart
299
kidney
263
brain
158
bone element
130
blood vessel
130
vasculature
122
limb
77
musculature of body
73
artery
56
eye
43
nerve
24
spleen
19
lung
18
ureter
16
skeleton
15
epithelium
4
gonad
4
ovary
2
pituitary gland
1
lymph node
1
pericardium
1
skin of body
1
spinal cord
1
thymus
Project
619
AMP
Genome assembly (visualization)
542
GRCh38
509
hg19
Lab
619
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
month_released!
March, 2020
BIOSAMPLE
ASSAY
619 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
WGBS
single cell RNA-seq
small RNA-seq
RNA microarray
tissue
adipose tissue
382
2
3
3
bone tissue
58
coronary artery
1
5
36
2
subcutaneous abdominal adipose tissue
36
3
tibial artery
1
23
1
2
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