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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
748
total RNA-seq
604
ChIP-seq
198
ATAC-seq
174
single cell RNA-seq
171
DNase-seq
87
RNA microarray
23
WGBS
23
pCHi-C
17
snATAC-seq
14
small RNA-seq
12
Hi-C
9
RRBS
3
snDrop-seq
2
FAIRE-seq
Assay category
936
Transcription
604
DNA binding
388
DNA accessibility
32
DNA methylation
12
3D chromatin structure
Target of assay
467
histone modification
466
histone
260
narrow histone mark
206
broad histone mark
137
control
transcription factor
16
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
545
February, 2021
239
October, 2019
227
August, 2021
193
May, 2020
159
June, 2019
121
August, 2017
May, 2019
82
November, 2017
77
February, 2023
74
April, 2019
71
July, 2019
47
September, 2023
42
May, 2022
35
May, 2024
30
March, 2020
24
February, 2020
19
April, 2020
18
October, 2017
18
October, 2018
17
December, 2017
15
May, 2023
12
November, 2018
7
January, 2019
4
December, 2018
3
December, 2019
3
May, 2021
2
January, 2018
1
November, 2019
Available data
1297
bam
1235
bigWig
800
tsv
709
bed narrowPeak
356
bigBed narrowPeak
222
tagAlign
193
bed broadPeak
172
bed bed3+
170
bigBed broadPeak
151
txt
102
fastq
64
xls
19
bed bedMethyl
19
bigBed bedMethyl
8
hic
7
bedpe bed3+
6
csv
5
bed bed3
1
tagAlign bed3+
Organism
2083
Homo sapiens
Biosample type
2085
tissue
728
primary cell
343
in vitro differentiated cells
210
cell line
10
stem cell
Organ
530
connective tissue
pancreas
471
adipose tissue
322
liver
298
kidney
282
heart
237
brain
158
bone element
115
limb
83
blood vessel
83
vasculature
75
musculature of body
68
artery
56
eye
43
nerve
20
lung
19
spleen
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2018
AMP
47
KPMP
19
LungMap
1
T1D
Genome assembly (visualization)
1310
GRCh38
1183
hg19
Lab
1801
AMP-T2D consortium
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
35
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
1
Kyle Gaulton, UCSD
Audit category:
91
inconsistent ontology term
8
audit script error
Audit category:
4
missing controlled_by
Audit category:
1
inconsistent control read length
month_released!
May, 2019
organ_slims!
adrenal gland
pancreas
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
2085 results
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total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
WGBS
pCHi-C
snATAC-seq
small RNA-seq
Hi-C
RRBS
snDrop-seq
FAIRE-seq
tissue
adipose tissue
382
2
3
3
1
liver
167
108
20
1
2
3
1
1
1
1
kidney
49
26
75
64
13
6
1
1
1
bone element
84
heart left ventricle
3
30
2
18
3
4
1
1
1
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