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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
399
total RNA-seq
73
ChIP-seq
17
ATAC-seq
6
WGBS
2
DNase-seq
2
RNA microarray
2
small RNA-seq
1
pCHi-C
Assay category
401
Transcription
73
DNA binding
19
DNA accessibility
6
DNA methylation
Target of assay
32
histone
32
histone modification
24
control
20
broad histone mark
17
transcription factor
12
narrow histone mark
5
RNA binding protein
Date released
386
February, 2021
57
August, 2017
23
October, 2018
15
February, 2023
10
July, 2019
2
February, 2020
1
August, 2021
1
December, 2019
1
January, 2018
1
June, 2019
1
March, 2020
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
October, 2019
Available data
440
bam
422
bigWig
402
tsv
43
fastq
25
bed narrowPeak
9
bigBed narrowPeak
8
tagAlign
6
bed bed3+
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
Organism
501
Homo sapiens
Biosample type
502
tissue
375
primary cell
77
cell line
25
in vitro differentiated cells
Organ
545
connective tissue
502
pancreas
487
adipose tissue
305
heart
295
kidney
179
brain
162
liver
158
bone element
107
blood vessel
107
vasculature
82
musculature of body
53
limb
47
artery
35
eye
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
nerve
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
502
AMP
Genome assembly (visualization)
435
hg19
422
GRCh38
Lab
502
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
Audit category:
12
missing controlled_by
month_released!
May, 2020
October, 2019
BIOSAMPLE
ASSAY
502 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
DNase-seq
RNA microarray
small RNA-seq
pCHi-C
tissue
adipose tissue
382
2
2
3
1
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
7
12
1
1
1
omental fat pad
5
11
1
2
1
pigmented layer of retina
2
12
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