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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
433
total RNA-seq
254
ATAC-seq
215
ChIP-seq
180
single cell RNA-seq
176
DNase-seq
86
RNA microarray
28
snATAC-seq
23
pCHi-C
21
WGBS
16
Hi-C
14
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
627
Transcription
462
DNA accessibility
215
DNA binding
32
DNA methylation
16
3D chromatin structure
Target of assay
histone modification
563
histone
283
broad histone mark
280
narrow histone mark
140
control
77
transcription factor
23
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
228
August, 2021
May, 2020
162
June, 2019
135
August, 2017
120
July, 2018
101
February, 2021
94
February, 2023
73
October, 2019
67
July, 2019
66
May, 2022
47
September, 2023
43
December, 2017
40
May, 2021
39
November, 2019
36
March, 2020
26
May, 2019
25
November, 2018
23
February, 2020
21
October, 2018
20
April, 2019
19
April, 2020
14
May, 2023
12
November, 2017
10
October, 2017
8
January, 2021
7
December, 2018
6
April, 2018
6
September, 2017
5
March, 2019
5
May, 2024
4
November, 2020
3
December, 2019
1
August, 2022
1
January, 2018
1
January, 2019
Available data
778
bam
628
bigWig
475
tsv
453
bed narrowPeak
261
fastq
240
bigBed narrowPeak
187
bed bed3+
176
bed broadPeak
174
bigBed broadPeak
157
txt
64
xls
28
tagAlign
23
bed bedMethyl
23
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
Organism
1466
Homo sapiens
Biosample type
1468
tissue
673
primary cell
623
cell line
222
in vitro differentiated cells
7
stem cell
Organ
connective tissue
456
adipose tissue
432
pancreas
279
kidney
218
heart
158
bone element
125
liver
81
brain
79
blood vessel
79
vasculature
73
limb
57
musculature of body
54
eye
53
artery
20
lung
19
nerve
19
spleen
18
ureter
16
skeleton
15
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1373
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
743
GRCh38
694
hg19
Lab
1151
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
5
Patrick T. Ellinor, Broad
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
88
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
6
missing controlled_by
month_released!
May, 2020
organ_slims!
connective tissue
ovary
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
1468 results
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total RNA-seq
ATAC-seq
ChIP-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
pCHi-C
WGBS
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
292
68
20
6
1
7
4
3
1
1
4
kidney
49
75
7
64
13
6
1
1
1
liver
24
20
57
1
2
1
3
1
1
1
bone element
84
heart left ventricle
3
2
11
18
3
1
4
1
1
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