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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
879
total RNA-seq
791
ChIP-seq
240
ATAC-seq
180
single cell RNA-seq
142
DNase-seq
86
RNA microarray
28
snATAC-seq
26
WGBS
25
pCHi-C
16
small RNA-seq
12
Hi-C
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1075
Transcription
791
DNA binding
414
DNA accessibility
37
DNA methylation
12
3D chromatin structure
Target of assay
552
histone modification
551
histone
282
narrow histone mark
269
broad histone mark
147
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
539
February, 2021
284
August, 2017
229
August, 2021
May, 2020
173
October, 2019
131
June, 2019
120
July, 2018
108
May, 2019
82
November, 2017
81
February, 2023
80
April, 2019
74
October, 2018
72
July, 2019
66
May, 2022
48
December, 2017
47
September, 2023
40
March, 2020
40
May, 2021
40
May, 2024
40
November, 2019
26
November, 2018
23
October, 2017
22
February, 2020
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
2
December, 2019
2
January, 2018
1
August, 2022
Available data
1600
bam
1511
bigWig
923
tsv
853
bed narrowPeak
477
bigBed narrowPeak
377
fastq
188
tagAlign
177
bed broadPeak
169
bed bed3+
157
txt
140
bigBed broadPeak
64
xls
24
bed bedMethyl
24
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2438
Homo sapiens
Biosample type
2447
tissue
582
cell line
535
primary cell
370
in vitro differentiated cells
10
stem cell
Organ
547
connective tissue
505
pancreas
488
adipose tissue
313
heart
299
kidney
265
brain
168
liver
158
bone element
133
blood vessel
133
vasculature
limb
82
musculature of body
73
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2350
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1601
GRCh38
1477
hg19
Lab
2095
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
90
inconsistent ontology term
27
inconsistent control
8
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
month_released!
May, 2020
organ_slims!
epithelium
limb
BIOSAMPLE
ASSAY
2447 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
small RNA-seq
Hi-C
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
292
70
68
6
1
7
4
3
1
1
4
adipose tissue
382
2
3
3
1
kidney
49
27
75
64
13
6
1
1
1
liver
24
95
20
1
2
3
1
1
1
1
bone element
84
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