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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
462
total RNA-seq
147
ChIP-seq
44
ATAC-seq
8
WGBS
7
DNase-seq
6
single cell RNA-seq
2
pCHi-C
2
small RNA-seq
1
Hi-C
1
RNA microarray
Assay category
470
Transcription
147
DNA binding
51
DNA accessibility
8
DNA methylation
1
3D chromatin structure
Target of assay
87
histone
87
histone modification
56
broad histone mark
40
control
31
narrow histone mark
20
transcription factor
8
RNA binding protein
Date released
444
February, 2021
57
August, 2017
50
May, 2019
36
February, 2023
28
October, 2019
23
October, 2018
17
July, 2019
7
August, 2021
5
February, 2020
4
June, 2019
4
March, 2020
1
January, 2018
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
Available data
585
bam
551
bigWig
471
tsv
113
bed narrowPeak
72
bigBed narrowPeak
43
fastq
11
bed bed3+
8
bed broadPeak
8
tagAlign
7
bigBed broadPeak
3
bed bedMethyl
3
bigBed bedMethyl
1
bedpe bed3+
1
hic
Organism
679
Homo sapiens
Biosample type
680
tissue
123
in vitro differentiated cells
74
cell line
69
primary cell
1
stem cell
Organ
547
connective tissue
488
adipose tissue
468
pancreas
361
liver
311
heart
299
kidney
265
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
82
musculature of body
73
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
0
embryo
Project
680
AMP
Genome assembly (visualization)
585
GRCh38
552
hg19
Lab
680
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
month_released!
May, 2021
BIOSAMPLE
ASSAY
680 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
DNase-seq
single cell RNA-seq
pCHi-C
small RNA-seq
Hi-C
RNA microarray
tissue
adipose tissue
382
2
3
3
1
bone tissue
58
coronary artery
1
5
36
2
subcutaneous abdominal adipose tissue
36
3
tibial artery
1
23
1
2
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