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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
624
ChIP-seq
554
total RNA-seq
221
ATAC-seq
177
single cell RNA-seq
172
DNase-seq
86
RNA microarray
28
snATAC-seq
21
WGBS
20
pCHi-C
15
Hi-C
14
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
745
Transcription
624
DNA binding
425
DNA accessibility
32
DNA methylation
15
3D chromatin structure
Target of assay
416
histone modification
415
histone
234
broad histone mark
181
narrow histone mark
133
control
77
transcription factor
23
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
October, 2019
228
August, 2021
227
August, 2017
193
May, 2020
162
June, 2019
120
July, 2018
115
May, 2019
101
February, 2021
94
February, 2023
82
November, 2017
80
April, 2019
67
July, 2019
66
May, 2022
51
October, 2018
48
December, 2017
47
September, 2023
40
May, 2021
40
May, 2024
39
March, 2020
39
November, 2019
25
November, 2018
23
February, 2020
October, 2017
19
April, 2020
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
1
August, 2022
1
January, 2018
Available data
1209
bam
1119
bigWig
809
bed narrowPeak
611
tsv
499
bigBed narrowPeak
318
fastq
202
bed broadPeak
195
bed bed3+
170
bigBed broadPeak
167
tagAlign
157
txt
64
xls
23
bed bedMethyl
23
bigBed bedMethyl
10
hic
9
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
Organism
1946
Homo sapiens
Biosample type
1954
tissue
1015
primary cell
632
cell line
291
in vitro differentiated cells
9
stem cell
Organ
connective tissue
497
pancreas
485
adipose tissue
355
liver
305
heart
281
kidney
163
brain
158
bone element
107
blood vessel
107
vasculature
82
musculature of body
53
limb
47
artery
35
eye
24
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
nerve
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1857
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1194
GRCh38
1099
hg19
Lab
1617
AMP-T2D consortium
128
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
Audit category:
88
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
10
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
month_released!
May, 2023
October, 2017
October, 2019
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
1954 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
50
278
54
6
1
7
3
1
1
4
liver
140
166
20
1
2
3
1
1
1
1
kidney
23
49
64
61
13
6
1
1
1
bone element
84
heart left ventricle
35
3
2
18
3
4
1
1
1
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