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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1030
total RNA-seq
570
ChIP-seq
241
ATAC-seq
178
DNase-seq
177
single cell RNA-seq
87
RNA microarray
28
snATAC-seq
27
WGBS
24
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1223
Transcription
570
DNA binding
451
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Target of assay
616
histone modification
615
histone
narrow histone mark
293
broad histone mark
184
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
234
August, 2017
229
August, 2021
166
May, 2020
163
June, 2019
120
July, 2018
113
October, 2019
95
February, 2023
82
May, 2019
77
July, 2019
66
May, 2022
63
October, 2018
57
April, 2019
54
November, 2017
47
September, 2023
46
December, 2017
40
May, 2021
40
November, 2019
37
March, 2020
26
November, 2018
25
February, 2020
25
May, 2024
October, 2017
19
April, 2020
May, 2023
8
January, 2021
7
December, 2018
6
April, 2018
6
September, 2017
5
January, 2019
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1650
bam
1491
bigWig
1075
tsv
707
bed narrowPeak
448
bigBed narrowPeak
333
fastq
199
bed bed3+
195
bed broadPeak
176
bigBed broadPeak
157
txt
116
tagAlign
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
Organism
2409
Homo sapiens
Biosample type
2416
tissue
973
primary cell
643
cell line
339
in vitro differentiated cells
9
stem cell
Organ
532
connective tissue
474
adipose tissue
468
pancreas
317
liver
275
heart
275
kidney
158
bone element
137
brain
115
blood vessel
115
vasculature
107
limb
73
musculature of body
67
artery
54
eye
35
nerve
22
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2321
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
1583
GRCh38
1503
hg19
Lab
2094
AMP-T2D consortium
128
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
25
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
Audit category:
89
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
19
missing controlled_by
Audit category:
3
inconsistent control read length
1
inconsistent assembly
month_released!
May, 2023
October, 2017
organ_slims!
small intestine
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
2416 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
292
34
67
1
6
7
4
3
1
1
4
adipose tissue
381
1
3
3
1
liver
167
103
20
2
1
3
1
1
1
1
kidney
49
17
64
13
61
6
1
1
1
bone element
84
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