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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
576
total RNA-seq
522
ChIP-seq
243
ATAC-seq
176
DNase-seq
168
single cell RNA-seq
86
RNA microarray
23
pCHi-C
21
WGBS
18
snATAC-seq
16
Hi-C
14
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
758
Transcription
522
DNA binding
441
DNA accessibility
32
DNA methylation
16
3D chromatin structure
Target of assay
595
histone modification
594
histone
narrow histone mark
283
broad histone mark
163
control
77
transcription factor
23
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
228
August, 2021
189
August, 2017
166
May, 2020
162
June, 2019
120
July, 2018
112
October, 2019
101
February, 2021
94
February, 2023
82
May, 2019
67
July, 2019
66
May, 2022
57
April, 2019
54
November, 2017
47
September, 2023
46
December, 2017
40
May, 2021
40
October, 2018
39
November, 2019
36
March, 2020
25
May, 2024
25
November, 2018
23
February, 2020
20
October, 2017
May, 2023
8
January, 2021
7
December, 2018
6
April, 2018
6
September, 2017
5
January, 2019
5
March, 2019
4
November, 2020
3
December, 2019
1
August, 2022
1
January, 2018
Available data
1167
bam
1025
bigWig
707
bed narrowPeak
618
tsv
444
bigBed narrowPeak
307
fastq
196
bed broadPeak
193
bed bed3+
174
bigBed broadPeak
157
txt
123
tagAlign
64
xls
23
bed bedMethyl
23
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
Organism
1880
Homo sapiens
Biosample type
1885
tissue
938
primary cell
643
cell line
258
in vitro differentiated cells
8
stem cell
Organ
connective tissue
475
adipose tissue
473
pancreas
317
liver
275
heart
275
kidney
158
bone element
151
brain
115
blood vessel
115
vasculature
107
limb
73
musculature of body
67
artery
54
eye
35
nerve
23
spleen
lung
18
ureter
16
skeleton
15
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1809
AMP
47
KPMP
29
T1D
Genome assembly (visualization)
1118
GRCh38
1036
hg19
Lab
1581
AMP-T2D consortium
128
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
25
Patrick T. Ellinor, Broad
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
88
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
10
missing controlled_by
Audit category:
3
inconsistent control read length
1
inconsistent assembly
month_released!
May, 2023
organ_slims!
connective tissue
lung
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
1885 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
RNA microarray
pCHi-C
WGBS
snATAC-seq
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
292
34
68
1
6
4
7
3
1
1
4
liver
167
103
20
2
1
1
3
1
1
1
kidney
49
17
64
13
61
6
1
1
1
bone element
84
heart left ventricle
3
26
2
3
18
1
4
1
1
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