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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1031
total RNA-seq
787
ChIP-seq
260
ATAC-seq
180
single cell RNA-seq
169
DNase-seq
87
RNA microarray
28
snATAC-seq
25
pCHi-C
21
WGBS
16
Hi-C
16
small RNA-seq
11
RRBS
4
MeRIP-seq
3
FAIRE-seq
3
snDrop-seq
Assay category
1227
Transcription
787
DNA binding
460
DNA accessibility
32
DNA methylation
16
3D chromatin structure
Target of assay
558
histone modification
557
histone
296
narrow histone mark
261
broad histone mark
172
control
87
transcription factor
RNA binding protein
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
282
August, 2017
242
October, 2019
229
August, 2021
193
May, 2020
163
June, 2019
120
July, 2018
111
May, 2019
95
February, 2023
November, 2017
77
July, 2019
76
April, 2019
66
May, 2022
63
October, 2018
47
September, 2023
46
December, 2017
40
March, 2020
40
May, 2021
40
November, 2019
35
May, 2024
November, 2018
25
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1789
bam
1665
bigWig
1076
tsv
883
bed narrowPeak
467
bigBed narrowPeak
336
fastq
198
bed broadPeak
194
bed bed3+
172
tagAlign
167
bigBed broadPeak
157
txt
64
xls
19
bed bedMethyl
19
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2632
Homo sapiens
Biosample type
2641
tissue
1071
primary cell
383
in vitro differentiated cells
276
cell line
10
stem cell
Organ
541
connective tissue
490
pancreas
482
adipose tissue
352
liver
303
heart
298
kidney
181
brain
158
bone element
130
blood vessel
130
vasculature
122
limb
82
musculature of body
72
artery
56
eye
43
nerve
20
lung
18
ureter
16
skeleton
16
spleen
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2544
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1753
GRCh38
1710
hg19
Lab
2294
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
35
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
91
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
25
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
month_released!
November, 2017
November, 2018
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
2641 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
pCHi-C
WGBS
Hi-C
small RNA-seq
RRBS
MeRIP-seq
FAIRE-seq
snDrop-seq
tissue
islet of Langerhans
292
69
68
6
1
7
4
3
1
4
1
adipose tissue
382
2
3
1
3
liver
167
140
20
1
1
3
1
1
1
kidney
49
26
75
64
13
6
1
1
1
bone element
84
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