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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1031
total RNA-seq
715
ChIP-seq
260
ATAC-seq
180
single cell RNA-seq
169
DNase-seq
87
RNA microarray
28
snATAC-seq
25
pCHi-C
21
WGBS
16
Hi-C
16
small RNA-seq
11
RRBS
3
FAIRE-seq
3
snDrop-seq
2
MeRIP-seq
Assay category
1227
Transcription
715
DNA binding
460
DNA accessibility
32
DNA methylation
16
3D chromatin structure
Target of assay
628
histone modification
627
histone
324
narrow histone mark
303
broad histone mark
control
87
transcription factor
28
RNA binding protein
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
255
August, 2017
229
August, 2021
215
October, 2019
170
May, 2020
163
June, 2019
120
July, 2018
95
February, 2023
93
May, 2019
77
July, 2019
70
November, 2017
66
April, 2019
66
May, 2022
47
September, 2023
45
October, 2018
40
March, 2020
40
May, 2021
40
May, 2024
40
November, 2019
36
December, 2017
25
February, 2020
November, 2018
20
October, 2017
19
April, 2020
15
May, 2023
8
January, 2021
6
April, 2018
6
January, 2019
5
March, 2019
3
December, 2018
3
December, 2019
2
January, 2018
2
November, 2020
1
August, 2022
Available data
1749
bigWig
1717
bam
1076
tsv
967
bed narrowPeak
544
bigBed narrowPeak
287
fastq
204
bed broadPeak
193
bed bed3+
186
tagAlign
167
bigBed broadPeak
157
txt
64
xls
19
bed bedMethyl
19
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2559
Homo sapiens
Biosample type
2567
tissue
1044
primary cell
478
cell line
357
in vitro differentiated cells
9
stem cell
Organ
522
connective tissue
469
pancreas
463
adipose tissue
308
liver
297
heart
293
kidney
238
brain
158
bone element
117
blood vessel
117
vasculature
105
limb
78
musculature of body
66
artery
56
eye
32
nerve
20
lung
18
ureter
16
skeleton
15
epithelium
11
spleen
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2470
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1834
GRCh38
1735
hg19
Lab
2217
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
2
Mark McCarthy, Oxford
2
Rohit N. Kulkarni, M.D., Ph.D.
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
91
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
month_released!
November, 2018
organ_slims!
bodily fluid
target.investigated_as!
control
BIOSAMPLE
ASSAY
2567 results
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total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
pCHi-C
WGBS
Hi-C
small RNA-seq
RRBS
FAIRE-seq
snDrop-seq
MeRIP-seq
tissue
islet of Langerhans
292
58
68
6
1
7
4
3
1
1
2
adipose tissue
382
1
3
1
3
liver
167
98
20
1
1
3
1
1
1
kidney
49
21
75
64
13
6
1
1
1
bone element
84
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