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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
955
total RNA-seq
807
ChIP-seq
127
ATAC-seq
110
single cell RNA-seq
105
DNase-seq
85
RNA microarray
25
WGBS
24
pCHi-C
22
snATAC-seq
15
small RNA-seq
13
Hi-C
10
RRBS
4
MeRIP-seq
3
FAIRE-seq
Assay category
1080
Transcription
807
DNA binding
257
DNA accessibility
35
DNA methylation
13
3D chromatin structure
Target of assay
554
histone modification
553
histone
296
narrow histone mark
257
broad histone mark
165
control
90
transcription factor
24
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
537
February, 2021
284
August, 2017
212
October, 2019
193
May, 2020
120
July, 2018
95
August, 2021
92
June, 2019
82
November, 2017
74
October, 2018
66
July, 2019
66
May, 2022
65
May, 2019
60
February, 2023
57
April, 2019
48
December, 2017
40
May, 2021
40
May, 2024
November, 2019
37
March, 2020
26
November, 2018
23
October, 2017
22
February, 2020
19
April, 2020
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
2
January, 2018
1
August, 2022
1
May, 2023
Available data
1683
bam
1592
bigWig
1031
tsv
711
bed narrowPeak
412
bigBed narrowPeak
377
fastq
238
tagAlign
140
bed broadPeak
132
bed bed3+
103
bigBed broadPeak
95
txt
23
bed bedMethyl
23
bigBed bedMethyl
8
bedpe bed3+
8
hic
5
bed bed3
1
bedpe
1
csv
1
tagAlign bed3+
Organism
2296
Homo sapiens
Biosample type
2305
tissue
1016
primary cell
561
cell line
389
in vitro differentiated cells
10
stem cell
Organ
546
connective tissue
487
adipose tissue
466
pancreas
361
liver
313
heart
kidney
265
brain
158
bone element
133
blood vessel
vasculature
122
limb
82
musculature of body
73
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2255
AMP
31
T1D
19
LungMap
Genome assembly (visualization)
1553
hg19
1550
GRCh38
Lab
2142
AMP-T2D consortium
52
Kyle Gaulton, UCSD
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
90
inconsistent ontology term
27
inconsistent control
2
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
month_released!
November, 2019
organ_slims!
kidney
vasculature
BIOSAMPLE
ASSAY
2305 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
WGBS
pCHi-C
snATAC-seq
small RNA-seq
Hi-C
RRBS
MeRIP-seq
FAIRE-seq
tissue
islet of Langerhans
273
71
49
6
1
4
7
2
1
4
1
adipose tissue
382
2
3
3
1
liver
167
145
20
1
2
3
1
1
1
1
bone element
84
heart left ventricle
3
35
2
18
3
4
1
1
1
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