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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
789
ChIP-seq
748
total RNA-seq
197
ATAC-seq
171
DNase-seq
165
single cell RNA-seq
87
RNA microarray
23
WGBS
23
pCHi-C
14
small RNA-seq
12
Hi-C
9
RRBS
7
snATAC-seq
3
snDrop-seq
2
FAIRE-seq
Assay category
927
Transcription
789
DNA binding
377
DNA accessibility
32
DNA methylation
12
3D chromatin structure
Target of assay
554
histone modification
553
histone
291
narrow histone mark
262
broad histone mark
158
control
77
transcription factor
20
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
545
February, 2021
238
October, 2019
227
August, 2021
193
May, 2020
159
June, 2019
137
August, 2017
113
May, 2019
82
November, 2017
80
April, 2019
77
February, 2023
71
July, 2019
48
December, 2017
47
September, 2023
42
May, 2022
40
May, 2024
30
March, 2020
24
February, 2020
23
October, 2018
19
November, 2018
18
October, 2017
15
May, 2023
7
December, 2018
7
January, 2019
3
December, 2019
3
May, 2021
2
January, 2018
November, 2019
Available data
1477
bam
1399
bigWig
860
bed narrowPeak
800
tsv
499
bigBed narrowPeak
222
tagAlign
193
bed broadPeak
178
bed bed3+
170
bigBed broadPeak
164
fastq
151
txt
64
xls
19
bed bedMethyl
19
bigBed bedMethyl
8
hic
7
bedpe bed3+
6
csv
5
bed bed3
1
tagAlign bed3+
Organism
2249
Homo sapiens
Biosample type
2250
tissue
742
primary cell
570
cell line
386
in vitro differentiated cells
10
stem cell
Organ
546
connective tissue
487
adipose tissue
pancreas
361
liver
313
heart
299
kidney
265
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
82
musculature of body
73
artery
56
eye
43
nerve
25
spleen
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2202
AMP
47
KPMP
1
T1D
Genome assembly (visualization)
1472
GRCh38
1341
hg19
Lab
1980
AMP-T2D consortium
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
1
Kyle Gaulton, UCSD
Audit category:
90
inconsistent ontology term
27
inconsistent control
8
audit script error
Audit category:
16
missing controlled_by
Audit category:
1
inconsistent control read length
month_released!
November, 2019
organ_slims!
lung
lymph node
pancreas
BIOSAMPLE
ASSAY
2250 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
single cell RNA-seq
RNA microarray
WGBS
pCHi-C
small RNA-seq
Hi-C
RRBS
snATAC-seq
snDrop-seq
FAIRE-seq
tissue
adipose tissue
2
382
3
3
1
liver
145
167
20
2
1
3
1
1
1
1
kidney
27
49
75
13
64
1
1
6
1
bone element
84
heart left ventricle
35
3
2
3
18
4
1
1
1
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