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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1005
total RNA-seq
743
ChIP-seq
202
ATAC-seq
174
single cell RNA-seq
173
DNase-seq
87
RNA microarray
28
snATAC-seq
25
WGBS
24
pCHi-C
16
small RNA-seq
14
Hi-C
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1195
Transcription
743
DNA binding
407
DNA accessibility
36
DNA methylation
14
3D chromatin structure
Target of assay
574
histone modification
573
histone
306
narrow histone mark
267
broad histone mark
171
control
transcription factor
25
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
261
August, 2017
223
August, 2021
216
October, 2019
193
May, 2020
160
June, 2019
120
July, 2018
82
November, 2017
74
April, 2019
70
July, 2019
66
May, 2022
64
May, 2019
60
February, 2023
59
October, 2018
47
September, 2023
40
May, 2021
November, 2019
37
March, 2020
35
May, 2024
23
October, 2017
22
February, 2020
19
April, 2020
19
November, 2018
17
December, 2017
15
May, 2023
8
January, 2021
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
December, 2018
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1695
bam
1593
bigWig
1043
tsv
792
bed narrowPeak
437
bigBed narrowPeak
298
fastq
238
tagAlign
208
bed broadPeak
187
bed bed3+
171
bigBed broadPeak
157
txt
64
xls
24
bed bedMethyl
24
bigBed bedMethyl
9
hic
8
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2504
Homo sapiens
Biosample type
2513
tissue
1043
primary cell
340
in vitro differentiated cells
224
cell line
10
stem cell
Organ
529
connective tissue
470
adipose tissue
449
pancreas
322
liver
301
heart
298
kidney
265
brain
158
bone element
130
blood vessel
vasculature
122
limb
82
musculature of body
72
artery
56
eye
43
nerve
20
lung
19
spleen
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2416
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1625
GRCh38
1560
hg19
Lab
2166
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
35
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
90
inconsistent ontology term
9
audit script error
Audit category:
8
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
month_released!
November, 2019
organ_slims!
vasculature
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
2513 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
small RNA-seq
Hi-C
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
273
64
49
6
1
7
4
2
1
1
4
adipose tissue
382
2
3
3
1
liver
167
108
20
1
2
3
1
1
1
1
kidney
49
26
75
64
13
6
1
1
1
bone element
84
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