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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
861
total RNA-seq
231
ATAC-seq
191
ChIP-seq
179
single cell RNA-seq
174
DNase-seq
87
RNA microarray
28
snATAC-seq
24
pCHi-C
23
WGBS
15
Hi-C
13
small RNA-seq
10
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1053
Transcription
437
DNA accessibility
191
DNA binding
33
DNA methylation
15
3D chromatin structure
Target of assay
histone
546
histone modification
278
narrow histone mark
268
broad histone mark
138
control
55
transcription factor
26
RNA binding protein
3
other context
3
other post-translational modification
2
nucleotide modification
Date released
544
February, 2021
229
August, 2021
163
June, 2019
139
August, 2017
120
July, 2018
95
February, 2023
73
October, 2019
69
July, 2019
47
September, 2023
44
October, 2018
40
May, 2021
40
November, 2019
35
March, 2020
26
May, 2019
26
May, 2022
24
February, 2020
20
April, 2019
19
April, 2020
19
November, 2018
15
May, 2023
12
November, 2017
October, 2017
8
January, 2021
7
December, 2018
6
April, 2018
6
September, 2017
5
March, 2019
5
May, 2024
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
1
January, 2019
Available data
1194
bam
1027
bigWig
922
tsv
395
bed narrowPeak
228
fastq
210
bigBed narrowPeak
187
bed bed3+
174
bed broadPeak
173
bigBed broadPeak
157
txt
64
xls
24
bed bedMethyl
24
bigBed bedMethyl
24
tagAlign
10
hic
9
bedpe bed3+
5
bed bed3
5
csv
1
bedpe
Organism
1844
Homo sapiens
Biosample type
1847
tissue
840
primary cell
279
in vitro differentiated cells
241
cell line
8
stem cell
Organ
513
connective tissue
455
adipose tissue
427
pancreas
liver
279
kidney
218
heart
158
bone element
79
blood vessel
79
vasculature
77
brain
73
limb
57
musculature of body
54
eye
53
artery
20
lung
19
nerve
18
spleen
18
ureter
16
skeleton
15
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1752
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
1161
GRCh38
1092
hg19
Lab
1571
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
19
Xin Sun, UCSD
5
Patrick T. Ellinor, Broad
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
Audit category:
89
inconsistent ontology term
9
audit script error
Audit category:
18
missing controlled_by
month_released!
October, 2017
organ_slims!
liver
target.investigated_as!
histone
BIOSAMPLE
ASSAY
1847 results
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total RNA-seq
ATAC-seq
ChIP-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
pCHi-C
WGBS
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
292
67
20
6
1
7
4
3
1
1
4
adipose tissue
382
3
1
1
3
kidney
49
75
7
64
13
6
1
1
1
bone element
84
bone tissue
58
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