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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1031
total RNA-seq
260
ATAC-seq
235
ChIP-seq
180
single cell RNA-seq
178
DNase-seq
87
RNA microarray
28
snATAC-seq
27
WGBS
23
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1227
Transcription
470
DNA accessibility
235
DNA binding
38
DNA methylation
16
3D chromatin structure
Target of assay
histone modification
597
histone
313
narrow histone mark
broad histone mark
158
control
79
transcription factor
17
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
229
August, 2021
166
May, 2020
163
June, 2019
160
August, 2017
120
July, 2018
95
February, 2023
77
July, 2019
74
October, 2019
66
May, 2022
47
September, 2023
October, 2018
43
December, 2017
40
November, 2019
39
May, 2021
37
March, 2020
26
May, 2019
26
November, 2018
25
February, 2020
20
April, 2019
19
April, 2020
15
May, 2023
12
November, 2017
11
October, 2017
8
January, 2021
7
December, 2018
6
April, 2018
6
September, 2017
5
March, 2019
5
May, 2024
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
1
January, 2019
Available data
1397
bam
1235
bigWig
1075
tsv
449
bed narrowPeak
261
fastq
234
bigBed narrowPeak
193
bed bed3+
178
bed broadPeak
176
bigBed broadPeak
157
txt
64
xls
52
tagAlign
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
Organism
2100
Homo sapiens
Biosample type
2103
tissue
849
primary cell
624
cell line
282
in vitro differentiated cells
8
stem cell
Organ
491
connective tissue
433
adipose tissue
411
pancreas
291
liver
279
kidney
218
heart
158
bone element
81
brain
79
blood vessel
79
vasculature
73
limb
57
musculature of body
54
eye
53
artery
20
lung
19
nerve
19
spleen
18
ureter
16
skeleton
15
epithelium
2
intestine
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2009
AMP
47
KPMP
28
T1D
19
LungMap
Genome assembly (visualization)
1350
GRCh38
1302
hg19
Lab
1787
AMP-T2D consortium
142
Katalin Susztak, Upenn
51
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
5
Patrick T. Ellinor, Broad
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
89
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
18
missing controlled_by
month_released!
October, 2018
organ_slims!
thymus
target.investigated_as!
broad histone mark
histone modification
BIOSAMPLE
ASSAY
2103 results
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total RNA-seq
ATAC-seq
ChIP-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
292
68
20
6
1
7
4
3
1
1
4
adipose tissue
382
3
1
3
1
liver
167
20
80
1
2
3
1
1
1
1
kidney
49
75
7
64
13
6
1
1
1
bone element
84
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