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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
455
total RNA-seq
41
ChIP-seq
6
WGBS
5
ATAC-seq
2
DNase-seq
2
small RNA-seq
1
RNA microarray
1
pCHi-C
Assay category
457
Transcription
41
DNA binding
7
DNA accessibility
6
DNA methylation
Target of assay
histone
32
histone modification
24
control
20
broad histone mark
17
transcription factor
12
narrow histone mark
5
RNA binding protein
Date released
444
February, 2021
25
August, 2017
23
October, 2018
10
July, 2019
2
February, 2020
1
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
1
March, 2020
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
October, 2019
Available data
497
bam
478
bigWig
457
tsv
42
fastq
11
bed narrowPeak
8
bigBed narrowPeak
6
bed bed3+
2
bed bedMethyl
2
bed broadPeak
2
bigBed bedMethyl
2
bigBed broadPeak
1
tagAlign
Organism
512
Homo sapiens
Biosample type
513
tissue
58
in vitro differentiated cells
31
primary cell
1
stem cell
Organ
513
connective tissue
455
adipose tissue
429
pancreas
291
liver
277
kidney
215
heart
158
bone element
72
brain
71
blood vessel
71
vasculature
57
musculature of body
47
limb
45
artery
35
eye
20
lung
19
spleen
18
ureter
16
skeleton
15
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
nerve
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
513
AMP
Genome assembly (visualization)
479
GRCh38
479
hg19
Lab
513
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
month_released!
October, 2019
target.investigated_as!
histone
BIOSAMPLE
ASSAY
513 results
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total RNA-seq
ChIP-seq
WGBS
ATAC-seq
DNase-seq
small RNA-seq
RNA microarray
pCHi-C
tissue
adipose tissue
382
1
3
2
1
bone tissue
58
subcutaneous adipose tissue
7
12
1
1
1
omental fat pad
5
11
1
2
1
white adipose tissue
12
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