Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
82
ChIP-seq
81
ATAC-seq
22
total RNA-seq
20
pCHi-C
7
Hi-C
2
snATAC-seq
1
single cell RNA-seq
Assay category
83
DNA accessibility
82
DNA binding
23
Transcription
7
3D chromatin structure
Target of assay
62
histone
62
histone modification
37
broad histone mark
25
narrow histone mark
14
control
6
transcription factor
4
RNA binding protein
Date released
545
February, 2021
284
August, 2017
242
October, 2019
229
August, 2021
193
May, 2020
163
June, 2019
120
July, 2018
115
May, 2019
95
February, 2023
82
November, 2017
80
April, 2019
77
July, 2019
74
October, 2018
66
May, 2022
48
December, 2017
47
September, 2023
40
March, 2020
40
May, 2021
40
May, 2024
40
November, 2019
26
November, 2018
25
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
0
October, 2022
Available data
130
bed narrowPeak
88
bam
76
bigWig
64
bigBed narrowPeak
32
tsv
7
bedpe bed3+
7
hic
5
bed bed3
4
txt
Organism
215
Homo sapiens
Biosample type
215
tissue
92
primary cell
24
in vitro differentiated cells
18
cell line
4
stem cell
Organ
100
heart
38
blood vessel
38
vasculature
35
artery
31
eye
27
pancreas
23
kidney
14
epithelium
8
bone element
8
skeleton
5
musculature of body
3
brain
3
liver
2
adipose tissue
2
connective tissue
2
intestine
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
ovary
1
small intestine
1
spleen
1
stomach
1
thymus
1
urinary bladder
Project
193
AMP
22
T1D
Genome assembly (visualization)
116
hg19
108
GRCh38
Lab
197
AMP-T2D consortium
18
Kyle Gaulton, UCSD
Audit category:
2
inconsistent ontology term
BIOSAMPLE
ASSAY
215 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
pCHi-C
Hi-C
snATAC-seq
single cell RNA-seq
tissue
heart left ventricle
35
1
1
1
coronary artery
35
islet of Langerhans
2
13
7
2
kidney
23
retina
15
2
+ See 26 more…
See all biosamples
Download