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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
275
ChIP-seq
22
total RNA-seq
13
ATAC-seq
4
DNase-seq
4
pCHi-C
1
Hi-C
Assay category
275
DNA binding
22
Transcription
17
DNA accessibility
1
3D chromatin structure
Target of assay
228
histone
228
histone modification
152
narrow histone mark
76
broad histone mark
41
control
6
transcription factor
4
RNA binding protein
Date released
545
February, 2021
239
October, 2019
227
August, 2021
193
May, 2020
159
June, 2019
137
August, 2017
113
May, 2019
82
November, 2017
80
April, 2019
77
February, 2023
71
July, 2019
48
December, 2017
47
September, 2023
42
May, 2022
40
May, 2024
31
March, 2020
24
February, 2020
23
October, 2018
19
April, 2020
19
November, 2018
18
October, 2017
15
May, 2023
7
December, 2018
7
January, 2019
3
December, 2019
3
May, 2021
2
January, 2018
1
November, 2019
Available data
265
bam
225
bigWig
216
bed narrowPeak
111
bigBed narrowPeak
49
tagAlign
8
tsv
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
1
bedpe bed3+
1
hic
1
tagAlign bed3+
Organism
319
Homo sapiens
Biosample type
319
tissue
34
primary cell
15
cell line
8
in vitro differentiated cells
Organ
86
brain
69
limb
65
heart
42
nerve
27
kidney
26
artery
26
blood vessel
26
vasculature
21
eye
6
liver
4
gonad
4
ovary
pancreas
2
connective tissue
2
pituitary gland
1
adipose tissue
1
lymph node
1
skin of body
Project
319
AMP
Genome assembly (visualization)
228
hg19
225
GRCh38
Lab
319
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
month_released!
September, 2020
organ_slims!
pancreas
BIOSAMPLE
ASSAY
319 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
pCHi-C
Hi-C
tissue
islet of Langerhans
21
14
10
4
tibial nerve
35
4
1
2
heart left ventricle
35
kidney
27
tibial artery
23
1
2
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