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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
503
total RNA-seq
121
single cell RNA-seq
85
RNA microarray
74
ATAC-seq
20
pCHi-C
16
snATAC-seq
9
Hi-C
3
snDrop-seq
2
ChIP-seq
Assay category
624
Transcription
90
DNA accessibility
9
3D chromatin structure
2
DNA binding
Target of assay
2
histone
2
histone modification
2
narrow histone mark
Date released
545
February, 2021
284
August, 2017
242
October, 2019
229
August, 2021
193
May, 2020
163
June, 2019
120
July, 2018
115
May, 2019
95
February, 2023
82
November, 2017
80
April, 2019
77
July, 2019
74
October, 2018
66
May, 2022
48
December, 2017
47
September, 2023
40
March, 2020
40
May, 2021
40
May, 2024
40
November, 2019
26
November, 2018
25
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
579
tsv
461
bam
455
bigWig
146
txt
74
bed narrowPeak
64
xls
8
bedpe bed3+
8
hic
6
csv
Organism
831
Homo sapiens
Biosample type
833
tissue
151
cell line
76
in vitro differentiated cells
53
primary cell
4
stem cell
Organ
446
connective tissue
388
adipose tissue
150
bone element
136
kidney
99
heart
20
lung
11
pancreas
9
blood vessel
9
vasculature
8
skeleton
6
limb
5
musculature of body
4
liver
2
artery
2
brain
2
intestine
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
ovary
1
small intestine
1
spleen
1
stomach
1
thymus
1
urinary bladder
Project
810
AMP
19
LungMap
4
T1D
Genome assembly (visualization)
525
GRCh38
471
hg19
Lab
684
AMP-T2D consortium
128
Katalin Susztak, Upenn
19
Xin Sun, UCSD
2
Bing Ren, UCSD
Audit category:
86
inconsistent ontology term
5
audit script error
BIOSAMPLE
ASSAY
833 results
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Clear Filters
total RNA-seq
single cell RNA-seq
RNA microarray
ATAC-seq
pCHi-C
snATAC-seq
Hi-C
snDrop-seq
ChIP-seq
tissue
adipose tissue
381
1
kidney
49
13
64
6
1
bone element
84
bone tissue
58
heart left ventricle
1
18
1
1
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