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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
19
pCHi-C
10
snATAC-seq
9
single cell RNA-seq
9
total RNA-seq
7
Hi-C
2
ATAC-seq
2
ChIP-seq
Assay category
18
Transcription
12
DNA accessibility
7
3D chromatin structure
2
DNA binding
Target of assay
2
histone
2
histone modification
2
narrow histone mark
Date released
February, 2021
284
August, 2017
242
October, 2019
229
August, 2021
193
May, 2020
163
June, 2019
120
July, 2018
115
May, 2019
95
February, 2023
82
November, 2017
80
April, 2019
77
July, 2019
74
October, 2018
66
May, 2022
48
December, 2017
47
September, 2023
40
May, 2024
40
November, 2019
39
March, 2020
39
May, 2021
26
November, 2018
25
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
27
tsv
11
bigWig
9
bam
7
bedpe bed3+
7
hic
2
bed narrowPeak
Organism
57
Homo sapiens
Biosample type
58
tissue
11
cell line
8
in vitro differentiated cells
4
stem cell
1
primary cell
Organ
20
lung
9
pancreas
7
heart
5
musculature of body
3
blood vessel
3
liver
3
vasculature
2
brain
2
intestine
1
adipose tissue
1
adrenal gland
1
connective tissue
1
esophagus
1
gonad
1
large intestine
1
ovary
1
small intestine
1
spleen
1
stomach
thymus
1
urinary bladder
Project
35
AMP
19
LungMap
4
T1D
Genome assembly (visualization)
18
hg19
9
GRCh38
Lab
39
AMP-T2D consortium
19
Xin Sun, UCSD
Audit category:
2
inconsistent ontology term
month_released!
February, 2021
organ_slims!
thymus
BIOSAMPLE
ASSAY
58 results
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pCHi-C
snATAC-seq
single cell RNA-seq
total RNA-seq
Hi-C
ATAC-seq
ChIP-seq
tissue
lung
1
10
9
islet of Langerhans
2
2
2
psoas muscle
1
2
2
aorta
1
1
1
heart left ventricle
1
1
1
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