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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
55
ChIP-seq
20
ATAC-seq
19
total RNA-seq
10
snATAC-seq
9
single cell RNA-seq
1
Hi-C
Assay category
55
DNA binding
30
DNA accessibility
28
Transcription
1
3D chromatin structure
Target of assay
30
histone
30
histone modification
29
control
broad histone mark
15
transcription factor
11
RNA binding protein
11
narrow histone mark
Date released
545
February, 2021
229
August, 2021
211
August, 2017
203
October, 2019
193
May, 2020
163
June, 2019
120
July, 2018
95
February, 2023
77
July, 2019
66
May, 2022
59
May, 2019
55
October, 2018
47
September, 2023
45
December, 2017
43
April, 2019
40
March, 2020
40
May, 2021
40
November, 2017
40
November, 2019
26
November, 2018
25
February, 2020
20
May, 2024
19
April, 2020
15
May, 2023
13
October, 2017
8
January, 2021
7
December, 2018
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
3
January, 2019
2
January, 2018
1
August, 2022
Available data
94
bam
47
fastq
46
bed narrowPeak
45
bigWig
26
bigBed narrowPeak
19
tsv
1
bedpe bed3+
1
hic
Organism
113
Homo sapiens
Biosample type
114
tissue
10
cell line
5
in vitro differentiated cells
2
primary cell
Organ
71
pancreas
24
adipose tissue
24
connective tissue
19
lung
Project
95
AMP
19
LungMap
Genome assembly (visualization)
66
hg19
65
GRCh38
Lab
95
AMP-T2D consortium
19
Xin Sun, UCSD
Audit category:
1
inconsistent ontology term
Audit category:
1
inconsistent control read length
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
114 results
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ChIP-seq
ATAC-seq
total RNA-seq
snATAC-seq
single cell RNA-seq
Hi-C
tissue
islet of Langerhans
19
19
1
body of pancreas
22
lung
10
9
subcutaneous adipose tissue
12
omental fat pad
11
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