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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
178
ChIP-seq
98
total RNA-seq
20
pCHi-C
9
WGBS
8
snATAC-seq
7
Hi-C
5
RRBS
4
ATAC-seq
2
DNase-seq
1
FAIRE-seq
Assay category
178
DNA binding
98
Transcription
15
DNA accessibility
14
DNA methylation
7
3D chromatin structure
Target of assay
126
histone modification
125
histone
73
broad histone mark
52
narrow histone mark
29
control
23
transcription factor
2
RNA binding protein
Date released
545
February, 2021
284
August, 2017
242
October, 2019
229
August, 2021
193
May, 2020
163
June, 2019
120
July, 2018
115
May, 2019
95
February, 2023
82
November, 2017
80
April, 2019
77
July, 2019
74
October, 2018
66
May, 2022
48
December, 2017
47
September, 2023
40
March, 2020
40
May, 2021
40
May, 2024
40
November, 2019
26
November, 2018
25
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
189
bigWig
179
bam
175
fastq
117
tsv
68
bed narrowPeak
59
tagAlign
26
bed bed3+
26
bed broadPeak
22
bigBed narrowPeak
7
bedpe bed3+
7
hic
5
bed bedMethyl
5
bigBed bedMethyl
Organism
325
Homo sapiens
Biosample type
332
tissue
76
in vitro differentiated cells
68
primary cell
11
cell line
4
stem cell
Organ
164
pancreas
58
adipose tissue
58
connective tissue
57
liver
31
musculature of body
7
heart
3
blood vessel
3
vasculature
2
brain
2
intestine
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
ovary
1
small intestine
1
spleen
1
stomach
1
thymus
1
urinary bladder
Project
320
AMP
12
T1D
Genome assembly (visualization)
198
hg19
167
GRCh38
Lab
324
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
2
inconsistent ontology term
Audit category:
22
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
BIOSAMPLE
ASSAY
332 results
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Clear Filters
ChIP-seq
total RNA-seq
pCHi-C
WGBS
snATAC-seq
Hi-C
RRBS
ATAC-seq
DNase-seq
FAIRE-seq
tissue
islet of Langerhans
44
91
4
2
1
1
liver
48
1
1
3
1
1
subcutaneous abdominal adipose tissue
36
3
skeletal muscle tissue
22
4
pancreas
14
1
1
4
1
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